Detailed Description

Load sites data from an RMF file.

Definition at line 21 of file rmf_links.h.

Public Member Functions
	HierarchyWithSitesLoadLink (RMF::FileConstHandle fh)

Public Member Functions inherited from IMP::rmf::HierarchyLoadLink
	HierarchyLoadLink (RMF::FileConstHandle fh)

virtual std::string	get_type_name () const override

virtual ::IMP::VersionInfo	get_version_info () const override
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::rmf::SimpleLoadLink< Particle >
Vector< Pointer< Particle > >	create (RMF::NodeConstHandle rt)

Vector< Pointer< Particle > >	create (RMF::NodeConstHandle rt, Model *m)

void	link (RMF::NodeConstHandle rt, const Vector< Pointer< Particle > > &ps)

Public Member Functions inherited from IMP::rmf::LoadLink
void	load (RMF::FileConstHandle fh)

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Static Public Member Functions
static const char *	get_name ()

Static Public Member Functions inherited from IMP::rmf::HierarchyLoadLink
static const char *	get_name ()

Protected Member Functions
virtual void	do_link_particle (Model *m, ParticleIndex root, ParticleIndex cur, RMF::NodeConstHandle node) override

virtual void	do_load_hierarchy (RMF::NodeConstHandle root_node, Model *m, ParticleIndex pi) override

virtual void	do_setup_particle (Model *m, ParticleIndex root, ParticleIndex cur, RMF::NodeConstHandle node) override

Protected Member Functions inherited from IMP::rmf::SimpleLoadLink< Particle >
	SimpleLoadLink (std::string name)

void	add_link (Particle *o, RMF::NodeConstHandle nh)

virtual Particle *	do_create (RMF::NodeConstHandle)

void	do_load (RMF::FileConstHandle fh) override

Protected Member Functions inherited from IMP::rmf::LoadLink
	LoadLink (std::string name)

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Member Function Documentation

virtual void IMP::npctransport::HierarchyWithSitesLoadLink::do_link_particle	(	Model *	m,
		ParticleIndex	root,
		ParticleIndex	cur,
		RMF::NodeConstHandle	node
	)

overrideprotectedvirtual

Called by rmf::HierarchyLoadLink::add_link_recursive()

link the specified rmf node to particle cur. In addition, load the list of sites associated with the rmf node together with their coordinates (children of type RMF::Geometry decorated with RMF::BallConst) and associate them with the particle type of cur in the SimulationData of cur.

Reimplemented from IMP::rmf::HierarchyLoadLink.

virtual void IMP::npctransport::HierarchyWithSitesLoadLink::do_load_hierarchy	(	RMF::NodeConstHandle	root_node,
		Model *	m,
		ParticleIndex	pi
	)

overrideprotectedvirtual

load the values of a hierarchy. also loads dynamic Transporting decorator transport directionality information if needed (which is used in ParticleTransportStatisticsOptimizerState)

Reimplemented from IMP::rmf::HierarchyLoadLink.

virtual void IMP::npctransport::HierarchyWithSitesLoadLink::do_setup_particle	(	Model *	m,
		ParticleIndex	root,
		ParticleIndex	cur,
		RMF::NodeConstHandle	node
	)

overrideprotectedvirtual

Overload this to take specific action on creating a member of the hierarchy.

Warning: do_create_recursive has not been stabilized and is likely to change without notice.

Reimplemented from IMP::rmf::HierarchyLoadLink.

Definition at line 52 of file rmf_links.h.

The documentation for this class was generated from the following file:

rmf_links.h

Detailed Description

Public Member Functions

Static Public Member Functions

Protected Member Functions

Member Function Documentation