Return all spatially-proximal pairs of particles (a,b) from the two SingletonContainers A and B, where a is in A and b is in B. More...

#include <IMP/container/CloseBipartitePairContainer.h>

Inheritance diagram for IMP::container::CloseBipartitePairContainer:

Detailed Description

Return all spatially-proximal pairs of particles (a,b) from the two SingletonContainers A and B, where a is in A and b is in B.

See Also: ClosePairContainer for a more detailed description. This container lists all close pairs of particles where one particle is taken from each of the input sets.; also AllPairContainer, ClosePairContainer, AllBipartitePairContainer for variants on the functionality provided.

Definition at line 35 of file CloseBipartitePairContainer.h.

Public Member Functions
	CloseBipartitePairContainer (SingletonContainerAdaptor a, SingletonContainerAdaptor b, double distance, double slack=1, std::string name="CloseBipartitePairContainer%1%")
	Get the individual particles from the passed SingletonContainer. More...

void	do_apply (const PairModifier *sm) const

ModelObjectsTemp	do_get_inputs () const

ParticleIndexes	get_all_possible_indexes () const
	Get contained particles. More...

ParticleIndexPairs	get_indexes () const

ParticleIndexPairs	get_range_indexes () const

virtual std::string	get_type_name () const override

virtual ::IMP::VersionInfo	get_version_info () const override
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::PairContainer
void	apply (const PairModifier *sm) const
	Apply a PairModifier to the contents. More...

void	apply_generic (const PairModifier *m) const
	Just use apply() in the base class. More...

void	apply_generic_moved (const PairModifier *m, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
	Just use apply_moved() in the base class. More...

void	apply_moved (const PairModifier *sm, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
	Apply a PairModifier to the contents. More...

const ParticleIndexPairs &	get_contents () const

Public Member Functions inherited from IMP::Container
ModelObjectsTemp	do_get_outputs () const override
	containers don't have outputs More...

std::size_t	get_contents_hash () const

virtual bool	get_is_decomposable () const

Public Member Functions inherited from IMP::ModelObject
	ModelObject (Model *m, std::string name)

bool	get_has_dependencies () const
	Return whether this object has dependencies computed. More...

bool	get_has_required_score_states () const
	Return whether score states are computed. More...

ModelObjectsTemp	get_inputs () const

ModelObjectsTemps	get_interactions () const
	Get the interacting sets induced by this ModelObject. More...

Model *	get_model () const

ModelObjectsTemp	get_outputs () const

const ScoreStatesTemp &	get_required_score_states () const
	Get the score states that are ancestors of this in the dependency graph. More...

void	set_has_dependencies (bool tf)
	Either invalidate the dependencies or ensure they are correct. More...

void	set_has_required_score_states (bool tf)
	Compute the required score states. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Methods to control the set of filters
PairPredicate objects can be added as filters to prevent the addition of pairs to the container output list. Pairs for which the predicates evaluate to a non-zero value are excluded from the list.
list	pair_filters
	A Python list of PairPredicates More...

void	remove_pair_filter (PairPredicate *d)

void	remove_pair_filters (const PairPredicates &d)

void	set_pair_filters (const PairPredicates &ps)

void	set_pair_filters_order (const PairPredicates &objs)

unsigned int	add_pair_filter (PairPredicate *obj)

void	add_pair_filters (const PairPredicates &objs)

void	clear_pair_filters ()

unsigned int	get_number_of_pair_filters () const

bool	get_has_pair_filters ()

PairPredicate *	get_pair_filter (unsigned int i) const

PairPredicates	get_pair_filters () const

void	erase_pair_filter (unsigned int i)

void	reserve_pair_filters (unsigned int sz)

Additional Inherited Members
Public Types inherited from IMP::PairContainer
typedef ParticleIndexPair	ContainedIndexType

typedef ParticleIndexPairs	ContainedIndexTypes

typedef ParticlePair	ContainedType

typedef ParticlePairsTemp	ContainedTypes

typedef PairModifier	Modifier

typedef const ParticleIndexPair &	PassContainedIndexType

Protected Member Functions inherited from IMP::PairContainer
	PairContainer (Model *m, std::string name="PairContainer %1%")

virtual void	do_apply_moved (const PairModifier *sm, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const

virtual bool	do_get_provides_access () const

Protected Member Functions inherited from IMP::Container
	Container (Model *m, std::string name="Container %1%")

Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemps	do_get_interactions () const

virtual void	handle_set_has_required_score_states (bool)

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::container::CloseBipartitePairContainer::CloseBipartitePairContainer	(	SingletonContainerAdaptor	a,
		SingletonContainerAdaptor	b,
		double	distance,
		double	slack = `1`,
		std::string	name = `"CloseBipartitePairContainer%1%"`
	)

Get the individual particles from the passed SingletonContainer.

Member Function Documentation

ModelObjectsTemp IMP::container::CloseBipartitePairContainer::do_get_inputs ( ) const

virtual

Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.

Implements IMP::ModelObject.

ParticleIndexes IMP::container::CloseBipartitePairContainer::get_all_possible_indexes ( ) const

virtual

Get contained particles.

Get a list of all particles contained in this one, given that the input containers are up to date.

Implements IMP::Container.

ParticleIndexPairs IMP::container::CloseBipartitePairContainer::get_indexes ( ) const

virtual

Get all the indexes contained in the container.

This should be protected but isn't for compatibility reasons.

External callers should use get_contents().

Implements IMP::PairContainer.

ParticleIndexPairs IMP::container::CloseBipartitePairContainer::get_range_indexes ( ) const

virtual

Get all the indexes that might possibly be contained in the container, useful with dynamic containers. For example, with a container::ClosePairContainer, this is the list of all pairs taken from the input list (those that are far apart in addition to those that are close).

Implements IMP::PairContainer.

virtual ::IMP::VersionInfo IMP::container::CloseBipartitePairContainer::get_version_info ( ) const

overridevirtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 92 of file CloseBipartitePairContainer.h.