IMP Reference Guide
2.20.2
The Integrative Modeling Platform
|
Restraints for keeping correct stereochemistry. More...
Restraints for keeping correct stereochemistry.
Classes | |
class | CharmmForceFieldRestraint |
Enable CHARMM force field. More... | |
class | ConnectivityRestraint |
This class creates a restraint between consecutive TempResidue objects OR an entire PMI MOlecule object. More... | |
class | ElasticNetworkRestraint |
Add harmonic restraints between all pairs. More... | |
class | ExcludedVolumeSphere |
A class to create an excluded volume restraint for a set of particles at a given resolution. More... | |
class | FusionRestraint |
This class creates a restraint between the termini two polypeptides, to simulate the sequence connectivity. More... | |
class | HelixRestraint |
Enforce ideal Helix dihedrals and bonds for a selection at resolution 0. More... | |
class | PlaneDihedralRestraint |
Restrain the dihedral between planes defined by three particles. More... | |
class | PseudoAtomicRestraint |
Add bonds and improper dihedral restraints for the CBs. More... | |
class | ResidueAngleRestraint |
Add angular restraint between triplets of consecutive residues/beads to enforce the stereochemistry. More... | |
class | ResidueBondRestraint |
Add bond restraint between pair of consecutive residues/beads to enforce the stereochemistry. More... | |
class | ResidueDihedralRestraint |
Add dihedral restraints between quadruplet of consecutive residues/beads to enforce the stereochemistry. More... | |
class | SecondaryStructure |
Experimental, requires isd_emxl for now. More... | |
class | SymmetryRestraint |
Create harmonic restraints between the reference and (transformed) clones. More... | |