IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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Compute mean density maps from structures. More...
Inherits object.
Compute mean density maps from structures.
Keeps a dictionary of density maps, keys are in the custom ranges. When you call add_subunits_density, it adds particle coordinates to the existing density maps.
Definition at line 1095 of file pmi1/Analysis.py.
Public Member Functions | |
def | __init__ |
Constructor. More... | |
def | add_subunits_density |
Add a frame to the densities. More... | |
def | get_density |
Get the current density for some component name. More... | |
def IMP.pmi1.analysis.GetModelDensity.__init__ | ( | self, | |
custom_ranges, | |||
representation = None , |
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resolution = 20.0 , |
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voxel = 5.0 |
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) |
Constructor.
custom_ranges | Required. It's a dictionary, keys are the density component names, values are selection tuples e.g. {'kin28':[['kin28',1,-1]], 'density_name_1' :[('ccl1')], 'density_name_2' :[(1,142,'tfb3d1'), (143,700,'tfb3d2')], |
representation | PMI representation, for doing selections. Not needed if you only pass hierarchies |
resolution | The MRC resolution of the output map (in Angstrom unit) |
voxel | The voxel size for the output map (lower is slower) |
Definition at line 1107 of file pmi1/Analysis.py.
def IMP.pmi1.analysis.GetModelDensity.add_subunits_density | ( | self, | |
hierarchy = None |
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) |
Add a frame to the densities.
hierarchy | Optionally read the hierarchy from somewhere. If not passed, will just read the representation. |
Definition at line 1124 of file pmi1/Analysis.py.
def IMP.pmi1.analysis.GetModelDensity.get_density | ( | self, | |
name | |||
) |
Get the current density for some component name.
Definition at line 1204 of file pmi1/Analysis.py.