- u -

• undo_apply_molecular_assignments() : IMP.pmi.macros.AnalysisReplicaExchange , IMP.pmi1.macros.AnalysisReplicaExchange
• UniformBackboneSampler() : IMP::kinematics::UniformBackboneSampler
• UniformBoundedRestraint() : IMP::spb::UniformBoundedRestraint
• UniformPrior() : IMP::isd::UniformPrior
• UnitSimplexD() : IMP::algebra::UnitSimplexD<-1 >
• unprotected_evaluate() : IMP::atom::CAAngleRestraint , IMP::atom::CADihedralRestraint , IMP::atom::CHARMMStereochemistryRestraint , IMP::atom::EzRestraint , IMP::atom::HelixRestraint , IMP::bayesianem::GaussianEMRestraint , IMP::container::MinimumPairRestraint , IMP::container::MinimumQuadRestraint , IMP::container::MinimumSingletonRestraint , IMP::container::MinimumTripletRestraint , IMP::container::PairsRestraint , IMP::container::QuadsRestraint , IMP::container::SingletonsRestraint , IMP::container::TripletsRestraint , IMP::core::ConnectivityRestraint , IMP::core::ConstantRestraint , IMP::core::DiameterRestraint , IMP::core::DihedralRestraint , IMP::core::ExcludedVolumeRestraint , IMP::core::MinimumRestraint , IMP::core::MSConnectivityRestraint , IMP::core::MultipleBinormalRestraint , IMP::core::PairRestraint , IMP::core::QuadRestraint , IMP::core::RigidBodyUmbrella , IMP::core::SingletonRestraint , IMP::core::TripletRestraint , IMP::core::VolumeRestraint , IMP::em2d::DummyRestraint , IMP::em2d::Em2DRestraint , IMP::em2d::ParticlesDummyRestraint , IMP::em2d::PCAFitRestraint , IMP::em::DensityFillingRestraint , IMP::em::EnvelopeFitRestraint , IMP::em::EnvelopePenetrationRestraint , IMP::em::FitRestraint , IMP::em::FitRestraintBayesEM3D , IMP::em::PCAFitRestraint , IMP::example::ExampleComplexRestraint , IMP::isd::AmbiguousNOERestraint , IMP::isd::AmbiguousRestraint , IMP::isd::AtomicCrossLinkMSRestraint , IMP::isd::CrossLinkMSRestraint , IMP::isd::CysteineCrossLinkRestraint , IMP::isd::FretRestraint , IMP::isd::GammaPrior , IMP::isd::GaussianAnchorEMRestraint , IMP::isd::GaussianEMRestraint , IMP::isd::GaussianProcessInterpolationRestraint , IMP::isd::GaussianRestraint , IMP::isd::ISDRestraint , IMP::isd::JeffreysRestraint , IMP::isd::LognormalAmbiguousRestraint , IMP::isd::LognormalRestraint , IMP::isd::LogWrapper , IMP::isd::MarginalHBondRestraint , IMP::isd::MarginalNOERestraint , IMP::isd::NOERestraint , IMP::isd::NormalSigmaPCRestraint , IMP::isd::ResidueProteinProximityRestraint , IMP::isd::StudentTRestraint , IMP::isd::TALOSRestraint , IMP::isd::UniformPrior , IMP::isd::vonMisesKappaConjugateRestraint , IMP::isd::vonMisesKappaJeffreysRestraint , IMP::isd::WeightRestraint , IMP::multifit::ComplementarityRestraint , IMP::multifit::DummyRestraint , IMP::multifit::RadiusOfGyrationRestraint , IMP::multifit::WeightedExcludedVolumeRestraint , IMP::npc::AssemblySymmetryByDihedralRestraint , IMP::npc::AssemblySymmetryByDistanceRestraint , IMP::npc::CompositeRestraint , IMP::npc::MembraneExclusionRestraint , IMP::npc::MembraneSurfaceLocationConditionalRestraint , IMP::npc::MembraneSurfaceLocationRestraint , IMP::npc::PerinuclearVolumeLocationRestraint , IMP::npc::PoreSideVolumeLocationRestraint , IMP::npc::ProteinChainRestraint , IMP::npc::ProteinContactRestraint , IMP::npc::ProteinProximityRestraint , IMP::npc::XYRadialPositionLowerRestraint , IMP::npc::XYRadialPositionRestraint , IMP::npc::XYRadialPositionUpperRestraint , IMP::npc::YAxialPositionLowerRestraint , IMP::npc::YAxialPositionRestraint , IMP::npc::YAxialPositionUpperRestraint , IMP::npc::ZAxialPositionLowerRestraint , IMP::npc::ZAxialPositionRestraint , IMP::npc::ZAxialPositionUpperRestraint , IMP::pmi1::CompositeRestraint , IMP::pmi1::MembraneRestraint , IMP::pmi1::SigmoidRestraintSphere , IMP::pmi::CompositeRestraint , IMP::pmi::MembraneRestraint , IMP::Restraint , IMP::RestraintSet , IMP::saxs::RadiusOfGyrationRestraint , IMP::saxs::Restraint , IMP::spb::DiameterRgyrRestraint , IMP::spb::DistanceTerminiRestraint , IMP::spb::EM2DRestraint , IMP::spb::TwoStateGoModelRestraint , IMP::spb::UniformBoundedRestraint
• unprotected_evaluate_if_below() : IMP::Restraint
• unprotected_evaluate_if_good() : IMP::Restraint
• unprotected_evaluate_moved() : IMP::isd::LogWrapper , IMP::Restraint
• update() : IMP.isd.Statistics.Statistics , IMP::isd::BivariateFunction , IMP::isd::Covariance1DFunction , IMP::isd::GeneralizedGuinierPorodFunction , IMP::isd::Linear1DFunction , IMP::isd::UnivariateFunction , IMP::Model , IMP::npctransport::Statistics , IMP::OptimizerState
• update_all_external_coordinates() : IMP::kinematics::KinematicForest
• update_all_internal_coordinates() : IMP::kinematics::KinematicForest
• update_always() : IMP::OptimizerState , IMP::rmf::SaveOptimizerState
• update_axis_of_rotation_from_cartesian_witnesses() : IMP::kinematics::BondAngleRevoluteJoint , IMP::kinematics::DihedralAngleRevoluteJoint , IMP::kinematics::RevoluteJoint
• update_cached_values() : IMP::isd::FStudentT
• update_cell_dimensions() : IMP::em::DensityHeader
• update_child_node_reference_frame() : IMP::kinematics::CompositeJoint , IMP::kinematics::Joint , IMP::kinematics::RevoluteJoint
• update_clusters() : IMP.pmi.macros.AnalysisReplicaExchange , IMP.pmi1.macros.AnalysisReplicaExchange
• update_coordinates() : IMP.isd.Statistics.Statistics
• update_coordinates_from_ref() : IMP::atom::TAMDParticle
• update_data() : IMP.EMageFit.database.Database2
• update_global_covariance() : IMP::core::Gaussian
• update_header() : IMP::em2d::Image , IMP::em::DensityMap
• update_joint_from_cartesian_witnesses() : IMP::kinematics::CompositeJoint , IMP::kinematics::Joint , IMP::kinematics::PrismaticJoint , IMP::kinematics::RevoluteJoint
• update_map_dimensions() : IMP::em::DensityHeader
• update_members() : IMP::core::RigidBody
• update_parents() : IMP::atom::Representation
• update_particle_type_xyz_distribution_map() : IMP::npctransport::Statistics
• update_particle_type_zr_distribution_map() : IMP::npctransport::BodyStatisticsOptimizerState , IMP::npctransport::Statistics
• update_resolution() : IMP::em::SampledDensityMap
• update_seldicts() : IMP.pmi.macros.AnalysisReplicaExchange , IMP.pmi1.macros.AnalysisReplicaExchange
• update_states() : IMP::Optimizer
• update_sufficient_statistics() : IMP::isd::FStudentT , IMP::isd::OneDimensionalSufficientDistribution , IMP::isd::PenalizedComplexityPrior
• update_voxel_size() : IMP::em::DensityMap