core/Hierarchy.h File Reference

Decorator for helping deal with a hierarchy. More...

#include <IMP/core/core_config.h>
#include "internal/hierarchy_helpers.h"
#include <IMP/SingletonModifier.h>
#include <IMP/Particle.h>
#include <IMP/Model.h>
#include <IMP/Decorator.h>
#include <IMP/decorator_macros.h>
#include <IMP/internal/utility.h>
#include <IMP/Pointer.h>
#include <boost/tuple/tuple.hpp>
#include <cereal/access.hpp>
#include <limits>
#include <vector>
#include <deque>
#include <cereal/types/base_class.hpp>

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Classes
class	IMP::core::Hierarchy
	A decorator for helping deal with a generalized hierarchy. More...
struct	IMP::core::HierarchyCounter
	A simple functor to count the number of particles in a hierarchy. More...
class	IMP::core::HierarchyTraits
	Define the type for a type of hierarchy. More...
class	IMP::core::HierarchyVisitor
	A visitor for traversal of a hierarchy. More...
class	IMP::core::ModifierVisitor
	A visitor which applies a modifier to each Particle in a hierarchy. More...

Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::core
	Basic functionality that is expected to be used by a wide variety of IMP users.

Typedefs
typedef IMP::Vector < HierarchyCounter >	IMP::core::HierarchyCounters
typedef IMP::Vector < HierarchyTraits >	IMP::core::HierarchyTraitsList

Functions
template<class HD , class F >
HD	IMP::core::find_breadth_first (HD h, F f)
	Find the first node which matches some criteria. More...
template<class H , class Out , class F >
Out	IMP::core::gather (H h, F f, Out out)
	Gather all the particles in the hierarchy that meet some criteria. More...
template<class H , class Out , class K , class V >
Out	IMP::core::gather_by_attribute (H h, K k, V v, Out out)
	Gather all the particles in the hierarchy which match on an attribute. More...
template<class H , class Out , class K0 , class V0 , class K1 , class V1 >
Out	IMP::core::gather_by_attributes (H h, K0 k0, V0 v0, K1 k1, V1 v1, Out out)
	Gather all the particles in the hierarchy which match on two attributes. More...
template<class H , class Out , class F >
Out	IMP::core::gather_slice (H h, F f, Out out)
	Gather all the uppermost particles in the hierarchy that meet some criteria. More...
GenericHierarchies	IMP::core::get_all_descendants (Hierarchy mhd)
	Get all the particles in the subtree. More...
GenericHierarchies	IMP::core::get_internal (Hierarchy mhd)
	Get all the non-leaves of the bit of hierarchy. More...
GenericHierarchies	IMP::core::get_leaves (Hierarchy mhd)
	Get all the leaves of the bit of hierarchy. More...
Hierarchy	IMP::core::get_root (Hierarchy h)
	Return the root of the hierarchy. More...
template<class ND >
std::ostream &	IMP::core::show (Hierarchy h, std::ostream &out=std::cout)
	Print the hierarchy using a given decorator to display each node. More...
template<class HD , class F >
F	IMP::core::visit_breadth_first (HD d, F f)
	Apply the visitor to each particle, breadth first. More...
template<class HD , class F >
F	IMP::core::visit_breadth_first_with_data (HD d, F f, typename F::result_type data)
	Apply functor F to each particle, traversing the hierarchy breadth first. More...
template<class HD , class F >
F	IMP::core::visit_depth_first (HD d, F &f)
	Apply functor F to each particle, traversing the hierarchy depth first. More...
template<class HD , class F >
F	IMP::core::visit_depth_first_with_data (HD d, F f, typename F::result_type data)
	Apply functor F to each particle, traversing the hierarchy depth first. More...

Detailed Description

Decorator for helping deal with a hierarchy.

Copyright 2007-2022 IMP Inventors. All rights reserved.

Definition in file core/Hierarchy.h.