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IMP Reference Guide  2.20.0
The Integrative Modeling Platform
IMP::score_functor::LoopStatistical Class Reference

Score atoms based on the Fiser/Melo loop modeling statistical potential. More...

#include <IMP/score_functor/LoopStatistical.h>

+ Inheritance diagram for IMP::score_functor::LoopStatistical:

Detailed Description

Score atoms based on the Fiser/Melo loop modeling statistical potential.

See Fiser et al, Modeling of loops in protein structures. Protein Science 9, 1753-1773, 2000.

Like DOPE, this potential should not be applied to two atoms from the same residue. You may need to use the SameResiduePairFilter to filter these out.

You need to use IMP::atom::add_loop_statistical_score_data() to add the requisite type data to the particles being scored.

Definition at line 37 of file LoopStatistical.h.

Public Member Functions

 LoopStatistical (double threshold=std::numeric_limits< double >::max())
 
 LoopStatistical (double threshold, TextInput data_file)
 
- Public Member Functions inherited from IMP::score_functor::Statistical< LoopStatisticalType, false, true >
 Statistical (IntKey k, double threshold, TextInput data_file)
 
 Statistical (IntKey k, double threshold, TextInput data_file, unsigned int shift)
 
bool get_is_trivially_zero (Model *m, const ParticleIndexPair &p, double squared_distance) const
 
double get_maximum_range (Model *, const ParticleIndexPair &) const
 
double get_score (Model *m, const ParticleIndexPair &pp, double distance) const
 
DerivativePair get_score_and_derivative (Model *m, const Array< 2, ParticleIndex > &pp, double distance) const
 
- Public Member Functions inherited from IMP::score_functor::Score
ModelObjectsTemp get_inputs (Model *m, const ParticleIndexes &pis) const
 
template<unsigned int D>
bool get_is_trivially_zero (Model *m, const Array< D, ParticleIndex > &p, double squared_distance) const
 
template<unsigned int D>
double get_maximum_range (Model *m, const Array< D, ParticleIndex > &p) const
 
template<unsigned int D>
double get_score (Model *m, const Array< D, ParticleIndex > &p, double distance) const
 Return the score at the passed feature size (eg distance). More...
 
template<unsigned int D>
DerivativePair get_score_and_derivative (Model *m, const Array< D, ParticleIndex > &p, double distance) const
 Return the score and derivative at the passed feature size (eg distance). More...
 
void show (std::ostream &) const
 

Static Public Member Functions

static IntKey get_loop_type_key ()
 

The documentation for this class was generated from the following file: