 |
|
IMP Reference Guide
2.20.0
The Integrative Modeling Platform
|
A base class for modifiers of ParticlesTemp. More...
#include <IMP/SingletonModifier.h>
Inheritance diagram for IMP::SingletonModifier:A base class for modifiers of ParticlesTemp.
The primary function of such a class is to change the passed particles.
Implementers should see IMP_SINGLETON_MODIFIER(). Also see SingletonDerivativeModifier.
Definition at line 32 of file SingletonModifier.h.
Public Types | |
| typedef Particle * | Argument |
| typedef ParticleIndex | IndexArgument |
Public Member Functions | |
| SingletonModifier (std::string name="SingletonModifier %1%") | |
| virtual void | apply_index (Model *m, ParticleIndex v) const =0 |
| virtual void | apply_indexes (Model *m, const ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound) const |
| virtual void | apply_indexes_moved (Model *m, const ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const |
| Public Member Functions inherited from IMP::ParticleInputs | |
| ModelObjectsTemp | get_inputs (Model *m, const ParticleIndexes &pis) const |
| Get the ModelObjects read when the given list of particles is used. More... | |
| Public Member Functions inherited from IMP::ParticleOutputs | |
| ModelObjectsTemp | get_outputs (Model *m, const ParticleIndexes &pis) const |
| Get the ModelObjects changed when the given list of particles is used. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| virtual VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
| virtual std::string | get_type_name () const |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::ParticleInputs | |
| virtual ModelObjectsTemp | do_get_inputs (Model *m, const ParticleIndexes &pis) const =0 |
| Overload this method to specify the inputs. More... | |
| Protected Member Functions inherited from IMP::ParticleOutputs | |
| virtual ModelObjectsTemp | do_get_outputs (Model *m, const ParticleIndexes &pis) const =0 |
| Overload this method to specify the outputs. More... | |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
|
pure virtual |
Apply the function to a single value
Implemented in IMP::core::TransformationSymmetry, IMP::core::WeightedDerivativesToRefined, IMP::core::CentroidOfRefined, IMP::core::TransformationAndReflectionSymmetry, IMP::core::CoverRefined, IMP::example::ExampleSingletonModifier, IMP::spb::TransformationSymmetry, IMP::core::DerivativesFromRefined, IMP::core::DerivativesToRefined, IMP::pmi1::InternalCoordinatesConstraint, IMP::core::Transform, IMP::atom::CoverBond, and IMP::spb::NuisanceRangeModifier.
|
virtual |
Apply the function to a collection of ParticlesTemp If bounds are passed, only apply to ones between the upper and lower bounds.
Reimplemented in IMP::core::TransformationSymmetry, IMP::core::WeightedDerivativesToRefined, IMP::core::CentroidOfRefined, IMP::core::TransformationAndReflectionSymmetry, IMP::core::CoverRefined, IMP::example::ExampleSingletonModifier, IMP::spb::TransformationSymmetry, IMP::core::DerivativesFromRefined, IMP::core::DerivativesToRefined, IMP::pmi1::InternalCoordinatesConstraint, IMP::core::Transform, IMP::atom::CoverBond, and IMP::spb::NuisanceRangeModifier.
Definition at line 46 of file SingletonModifier.h.
|
virtual |
Apply the function to a collection of ParticlesTemp Information on particles that moved since the last scoring function evaluation is also passed, which may be used to accelerate the computation.
Definition at line 58 of file SingletonModifier.h.