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IMP Reference Guide  2.20.0
The Integrative Modeling Platform
CoarseCC.h File Reference

Perform coarse fitting between two density objects. More...

#include <IMP/em/em_config.h>
#include "exp.h"
#include "DensityMap.h"
#include "SampledDensityMap.h"
#include "SurfaceShellDensityMap.h"
#include "def.h"
#include <vector>
#include <IMP/core/rigid_bodies.h>
#include <IMP/Refiner.h>
#include "masking.h"
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Go to the source code of this file.

Namespaces

 IMP
 Base functionality and abstract base classes for representation, scoring and sampling.
 
 IMP::em
 Basic utilities for handling cryo-electron microscopy 3D density maps.
 

Functions

double IMP::em::get_coarse_cc_coefficient (const DensityMap *grid1, const DensityMap *grid2, double grid2_voxel_data_threshold, bool allow_padding=false, FloatPair norm_factors=FloatPair(0., 0.))
 Calculates the cross correlation coefficient between two maps. More...
 
double IMP::em::get_coarse_cc_local_coefficient (const DensityMap *em_map, DensityMap *model_map, double voxel_data_threshold)
 Local cross correlation function. More...
 
double IMP::em::get_coarse_cc_score (DensityMap *data, SampledDensityMap *model_map, double scalefactor, bool recalc_rms=true, bool resample=true, FloatPair norm_factors=FloatPair(0., 0.))
 Calculates the value of the EM fitting term. More...
 

Detailed Description

Perform coarse fitting between two density objects.

Copyright 2007-2022 IMP Inventors. All rights reserved.

Definition in file CoarseCC.h.