- r -

• R_factor_score() : IMP::saxs::RadialDistributionFunction
• RadialDistributionFunction() : IMP::saxs::RadialDistributionFunction
• radius_of_gyration() : IMP::saxs::Profile
• RadiusOfGyrationRestraint() : IMP::multifit::RadiusOfGyrationRestraint , IMP::saxs::RadiusOfGyrationRestraint
• randomize_particles() : IMP.test.TestCase
• read() : IMP::em2d::Image , IMP::em2d::RegistrationResult , IMP::em::EMReaderWriter , IMP::em::ImageHeader , IMP::em::MRCReaderWriter , IMP::em::SpiderMapReaderWriter , IMP.isd.TALOSReader.TALOSReader , IMP.pmi.topology.TopologyReader , IMP.pmi1.topology.TopologyReader
• read_AMBER_stats() : IMP.isd.Analysis.Analysis
• read_AMBER_variables() : IMP.isd.Analysis.Analysis
• read_data() : IMP::em::EMReaderWriter
• read_from_floats() : IMP::em2d::SpiderImageReaderWriter
• read_from_image() : IMP::em2d::RegistrationResult
• read_from_ints() : IMP::em2d::JPGImageReaderWriter , IMP::em2d::TIFFImageReaderWriter
• read_header() : IMP::em::EMReaderWriter
• read_library_file() : IMP::rotamer::RotamerLibrary
• read_map() : IMP::em::DensityMap
• read_merge_tree() : IMP.EMageFit.domino_model.DominoModel
• read_partial_profiles() : IMP::saxs::Profile
• read_SAXS_file() : IMP::saxs::Profile
• read_shell_commands() : IMP.test.ApplicationTestCase
• read_stats() : IMP.isd.Analysis.Analysis
• read_variables() : IMP.isd.Analysis.Analysis
• ReferenceFrame3D() : IMP::algebra::ReferenceFrame3D
• refine() : IMP.pmi.macros.AnalysisReplicaExchange , IMP.pmi1.macros.AnalysisReplicaExchange
• RefinedPairsPairScore() : IMP::core::RefinedPairsPairScore
• Refiner() : IMP::Refiner
• reflect() : IMP::core::Direction , IMP::core::Surface
• reject() : IMP::core::MonteCarloMover
• release() : IMP::Pointer< O > , IMP::PointerMember< O >
• remove() : IMP.pmi.tools.Segments , IMP.pmi1.tools.Segments , IMP::SparseSymmetricPairMemoizer< Generator, Checker >
• remove_atom() : IMP::atom::CHARMMIdealResidueTopology
• remove_attribute() : IMP::Model
• remove_data() : IMP::Model
• remove_fgs_with_prefix() : IMP::npctransport::SimulationData
• remove_floppy_bodies() : IMP.pmi1.representation.Representation
• remove_floppy_bodies_from_component() : IMP.pmi1.representation.Representation
• remove_member() : IMP::core::RigidBody
• remove_particle() : IMP::core::TableRefiner , IMP::Model
• remove_particle_type() : IMP::npctransport::Scoring , IMP::npctransport::SimulationData , IMP::npctransport::Statistics
• remove_representation() : IMP::atom::Representation
• remove_rigid_motion() : IMP::atom::RemoveRigidMotionOptimizerState
• remove_translation() : IMP::atom::RemoveTranslationOptimizerState
• rename_proteins() : IMP.pmi.io.crosslink.CrossLinkDataBase
• resample() : IMP::em::SampledDensityMap , IMP::em::SurfaceShellDensityMap , IMP::saxs::Profile , IMP::saxs::ProfileFitter< ScoringFunctionT >
• rescale_velocities() : IMP::atom::BerendsenThermostatOptimizerState , IMP::atom::LangevinThermostatOptimizerState , IMP::atom::VelocityScalingOptimizerState , IMP.isd.shared_functions.sfo_common , IMP::spb::MolecularDynamicsWithWte
• reset() : IMP::benchmark::Profiler , IMP::CreateLogContext , IMP::npctransport::BipartitePairsStatisticsOptimizerState , IMP::npctransport::BodyStatisticsOptimizerState , IMP::npctransport::ChainStatisticsOptimizerState , IMP::npctransport::GlobalStatisticsOptimizerState , IMP::npctransport::ParticleTransportStatisticsOptimizerState , IMP::OptimizerState , IMP::ScopedAddCacheAttribute< Key, Value > , IMP::ScopedSetAttribute< Key, Value > , IMP::SetCheckState , IMP::SetLogState , IMP::SetLogTarget , IMP::SetNumberOfThreads
• reset_data() : IMP::em::DensityMap
• reset_flags() : IMP::isd::MultivariateFNormalSufficient
• reset_moved_particles() : IMP::core::IncrementalScoringFunction
• reset_random_pool() : IMP::atom::BrownianDynamics
• reset_rmf() : IMP::npctransport::SimulationData
• reset_root() : IMP::kinematics::KinematicForest
• reset_statistics_optimizer_states() : IMP::npctransport::Statistics
• reset_stats() : IMP::core::RigidBodyTunneler
• residue_range() : IMP.pmi.topology.Molecule
• ResidueProteinProximityRestraint() : IMP::isd::ResidueProteinProximityRestraint
• restore_dependencies() : IMP::Model
• Restraint() : IMP::Restraint , IMP::saxs::Restraint
• RestraintScoreSubsetFilterTable() : IMP::domino::RestraintScoreSubsetFilterTable
• RestraintSet() : IMP::RestraintSet
• retrieve_data() : IMP.EMageFit.database.Database2
• RevoluteJoint() : IMP::kinematics::RevoluteJoint
• RigidBodiesImageFitRestraint() : IMP::em2d::RigidBodiesImageFitRestraint
• RigidBodyDistancePairScore() : IMP::core::RigidBodyDistancePairScore
• RigidBodyMover() : IMP::core::RigidBodyMover , IMP::symmetry::RigidBodyMover
• RigidBodyNewMover() : IMP::spb::RigidBodyNewMover
• RigidBodyTunneler() : IMP::core::RigidBodyTunneler
• RigidBodyUmbrella() : IMP::core::RigidBodyUmbrella
• rmsd() : IMP.pmi.macros.AnalysisReplicaExchange , IMP.pmi1.macros.AnalysisReplicaExchange
• rmsd_helper() : IMP.pmi.macros.AnalysisReplicaExchange , IMP.pmi1.macros.AnalysisReplicaExchange
• rmsf() : IMP.pmi.macros.AnalysisReplicaExchange , IMP.pmi1.macros.AnalysisReplicaExchange
• RotamerAngleTuple() : IMP::rotamer::RotamerAngleTuple
• RotamerCalculator() : IMP::rotamer::RotamerCalculator
• RotamerLibrary() : IMP::rotamer::RotamerLibrary
• Rotation2D() : IMP::algebra::Rotation2D
• Rotation3D() : IMP::algebra::Rotation3D
• RRT() : IMP::kinematics::RRT
• run() : IMP::kinematics::RRT
• run_application() : IMP.test.ApplicationTestCase
• run_example() : IMP.test.TestCase
• run_monte_carlo() : IMP.EMageFit.monte_carlo.MonteCarloRelativeMoves
• run_monte_carlo_with_relative_movers() : IMP.EMageFit.monte_carlo.MonteCarloRelativeMoves
• run_python_application() : IMP.test.ApplicationTestCase
• run_python_module() : IMP.test.TestCase
• run_script() : IMP.test.ApplicationTestCase
• run_shell_command() : IMP.test.ApplicationTestCase