A decorator for a representation.
It stores a number of copies of its sub hierarchy each with an associated resolution. You can use it to get the representation at a given resolution.
- Note
- The particle returned for a given representation should be thought of as replacing this particle (not as a child of it).
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Only one Representation node is allowed in any path up the tree as nesting them does not have a clear meaning.
Definition at line 39 of file Representation.h.
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| Representation (::IMP::Model *m,::IMP::ParticleIndex id) |
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| Representation (const IMP::ParticleAdaptor &d) |
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| void | add_representation (ParticleIndexAdaptor rep, RepresentationType type=BALLS, double resolution=-1) |
| | Add the representation for the given resolution. More...
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| Hierarchy | get_representation (double resolution, RepresentationType type=BALLS) |
| | Get children at the resolution closest to resolution of the passed type. More...
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| Hierarchies | get_representations (RepresentationType type=BALLS) |
| | Return all children at all resolutions. More...
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| Floats | get_resolutions (RepresentationType type=BALLS) const |
| | Get all resolutions that are available for a specific RepresentationType. More...
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| void | remove_representation (ParticleIndexAdaptor rep) |
| | Remove the given representation. More...
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void | show (std::ostream &out=std::cout) const |
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| void | update_parents () |
| | If you've changed the parent, update all the resolutions. More...
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| Hierarchy (Model *m, ParticleIndex pi) |
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| Hierarchy (ParticleAdaptor pi) |
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| | Hierarchy () |
| | Null constructor. More...
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| | Hierarchy (IMP::core::Hierarchy h) |
| | The traits must match. More...
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| void | add_child (Hierarchy o) |
| | Add a child and check that the types are appropriate. More...
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| Hierarchy | get_child (unsigned int i) const |
| | Get the ith child based on the order they were added. More...
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| Hierarchies | get_children () const |
| | Return the children in the order they were added. More...
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| C | get_children () const |
| | Get the children in a container of your choosing, eg ParticlesTemp. More...
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| bool | get_is_valid (bool print_info=false) const |
| | Return true if the hierarchy is valid. More...
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| Hierarchy | get_parent () const |
| | Get the parent particle. More...
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void | show (std::ostream &out=std::cout) const |
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| Hierarchy (const IMP::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) |
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| Hierarchy (::IMP::Model *m,::IMP::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) |
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void | add_child (Hierarchy h) const |
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void | add_child_at (Hierarchy h, unsigned int pos) |
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void | clear_children () |
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Hierarchy | get_child (unsigned int i) const |
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ParticleIndex | get_child_index (unsigned int i) const |
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| int | get_child_index () const |
| | Return i such that get_parent().get_child(i) == this More...
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GenericHierarchies | get_children () const |
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ParticleIndexes | get_children_indexes () const |
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const DecoratorTraits & | get_decorator_traits () const |
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unsigned int | get_number_of_children () const |
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| Hierarchy | get_parent () const |
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HierarchyTraits | get_traits () |
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void | remove_child (unsigned int i) |
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void | remove_child (Hierarchy h) |
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void | show (std::ostream &out=std::cout) const |
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| bool | get_is_valid () const |
| | Returns true if constructed with a non-default constructor. More...
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| Model * | get_model () const |
| | Returns the Model containing the particle. More...
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| Particle * | get_particle () const |
| | Returns the particle decorated by this decorator. More...
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| ParticleIndex | get_particle_index () const |
| | Returns the particle index decorated by this decorator. More...
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| operator Particle * () const |
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| operator ParticleIndex () const |
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Particle * | operator-> () const |
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static bool | get_is_setup (const IMP::ParticleAdaptor &p) |
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static bool | get_is_setup (Model *m, ParticleIndex pi) |
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| static Representation | setup_particle (IMP::ParticleAdaptor pa) |
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| static Representation | setup_particle (Model *m, ParticleIndex pi) |
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| static Representation | setup_particle (Model *m, ParticleIndex pi, double resolution) |
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| static Representation | setup_particle (IMP::ParticleAdaptor pa, double resolution) |
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| static Representation | setup_particle (IMP::ParticleAdaptor pa, Representation other) |
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| static Representation | setup_particle (Model *m, ParticleIndex pi, Representation other) |
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| static bool | get_is_setup (Model *m, ParticleIndex p) |
| | Check if the particle has the needed attributes for a cast to succeed. More...
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static const
IMP::core::HierarchyTraits & | get_traits () |
| | Get the molecular hierarchy HierarchyTraits. More...
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| static Hierarchy | setup_particle (Model *m, ParticleIndex pi, ParticleIndexesAdaptor children=ParticleIndexesAdaptor()) |
| | Create a Hierarchy of level t by adding the needed attributes. More...
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| static TriggerKey | get_changed_key () |
| | The key used to signal to the Model that the Hierarchy has changed. More...
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static const DecoratorTraits & | get_default_decorator_traits () |
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| static const HierarchyTraits & | get_default_traits () |
| | Get the default hierarchy traits. More...
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static bool | get_is_setup (const IMP::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) |
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| static bool | get_is_setup (Model *, ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits()) |
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static Hierarchy | setup_particle (IMP::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) |
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| static Hierarchy | setup_particle (Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits()) |
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| static Hierarchy | setup_particle (Model *m, ParticleIndex pi, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) |
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static Hierarchy | setup_particle (IMP::ParticleAdaptor d, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) |
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static Hierarchy | setup_particle (IMP::ParticleAdaptor d, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) |
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static Hierarchy | setup_particle (Model *m, ParticleIndex pi, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) |
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Inheritance diagram for IMP::atom::Representation: