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IMP Reference Guide
2.11.1
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
Class List
Class Index
Class Hierarchy
Class Members
All
Functions
Variables
Enumerations
Related Functions
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~
Here is a list of all documented class members with links to the class documentation for each member:
- e -
EdgeFloatPropertyMap :
IMP::atom::BondGraph
EdgeIntPropertyMap :
IMP::atom::BondGraph
Em2DRestraint() :
IMP::em2d::Em2DRestraint
EM2DRestraint() :
IMP::spb::EM2DRestraint
empty :
IMP::em::SpiderHeader
enable_all_movers() :
IMP.pmi.dof.DegreesOfFreedom
EnvelopeFitRestraint() :
IMP::em::EnvelopeFitRestraint
EnvelopePenetrationRestraint() :
IMP::em::EnvelopePenetrationRestraint
estimate_cv_constant() :
IMP.isd.TuneRex.CvEstimator
estimate_cv_interpolate() :
IMP.isd.TuneRex.CvEstimator
estimate_cv_mbar() :
IMP.isd.TuneRex.CvEstimator
evaluate() :
IMP::core::ClosedCubicSpline
,
IMP::core::Cosine
,
IMP::core::Harmonic
,
IMP::core::HarmonicLowerBound
,
IMP::core::HarmonicUpperBound
,
IMP::core::HarmonicWell
,
IMP::core::Linear
,
IMP::core::SurfaceTetheredChain
,
IMP::core::TruncatedHarmonic< DIRECTION >
,
IMP::core::WeightedSum
,
IMP::core::WeightedSumOfExponential
,
IMP::em::CoarseCCatIntervals
,
IMP::example::ExampleUnaryFunction
,
IMP::isd::MultivariateFNormalSufficient
,
IMP::isd::OneDimensionalDistribution
,
IMP::isd::OneDimensionalSufficientDistribution
,
IMP::misc::FreelyJointedChain
,
IMP::misc::WormLikeChain
,
IMP.pmi.restraints.RestraintBase
,
IMP.pmi1.restraints.RestraintBase
,
IMP::score_functor::ScoreUnaryFunction< Score, D >
,
IMP::ScoringFunction
,
IMP::spb::Gaussian
,
IMP::UnaryFunction
evaluate_derivative_alpha() :
IMP::isd::PenalizedComplexityPrior
evaluate_derivative_Dxi() :
IMP::isd::PenalizedComplexityPrior
evaluate_derivative_factor() :
IMP::isd::MultivariateFNormalSufficient
evaluate_derivative_FM() :
IMP::isd::FStudentT
,
IMP::isd::MultivariateFNormalSufficient
evaluate_derivative_Fx() :
IMP::isd::FStudentT
evaluate_derivative_FX() :
IMP::isd::FStudentT
evaluate_derivative_Jxi() :
IMP::isd::PenalizedComplexityPrior
evaluate_derivative_LogJX() :
IMP::isd::FStudentT
evaluate_derivative_nu() :
IMP::isd::FStudentT
evaluate_derivative_sigma() :
IMP::isd::FStudentT
evaluate_derivative_Sigma() :
IMP::isd::MultivariateFNormalSufficient
evaluate_derivative_xi() :
IMP::isd::PenalizedComplexityPrior
evaluate_for_contributions() :
IMP::isd::AtomicCrossLinkMSRestraint
evaluate_if_good_index() :
IMP::core::ClosePairsPairScore
,
IMP::core::KClosePairsPairScore
,
IMP::PairScore
,
IMP::QuadScore
,
IMP::SingletonScore
,
IMP::TripletScore
evaluate_if_good_indexes() :
IMP::atom::AngleSingletonScore
,
IMP::atom::BondSingletonScore
,
IMP::atom::CoulombPairScore
,
IMP::atom::DihedralSingletonScore
,
IMP::atom::ImproperSingletonScore
,
IMP::atom::LennardJonesPairScore
,
IMP::container::MinimumPairScore
,
IMP::container::MinimumQuadScore
,
IMP::container::MinimumSingletonScore
,
IMP::container::MinimumTripletScore
,
IMP::core::AngleTripletScore
,
IMP::core::ClosePairsPairScore
,
IMP::core::GenericAttributeSingletonScore< UF >
,
IMP::core::GenericBoundingBox3DSingletonScore< UF >
,
IMP::core::GenericBoundingSphere3DSingletonScore< UF >
,
IMP::core::GenericDistanceToSingletonScore< UF >
,
IMP::core::HarmonicUpperBoundSphereDiameterPairScore
,
IMP::core::KClosePairsPairScore
,
IMP::core::NormalizedSphereDistancePairScore
,
IMP::core::PredicateSingletonScore< Predicate, Score >
,
IMP::core::RefinedPairsPairScore
,
IMP::core::RigidBodyAnglePairScore
,
IMP::core::SphereDistanceToSingletonScore
,
IMP::core::TransformedDistancePairScore
,
IMP::core::TypedPairScore
,
IMP::core::WeightedSphereDistancePairScore
,
IMP::example::ExamplePairScore
,
IMP::isd::RepulsiveDistancePairScore
,
IMP::misc::LowestRefinedPairScore
,
IMP::misc::SoftCylinderPairScore
,
IMP::npc::MinimumSphereDistancePairScore
,
IMP::npctransport::AnchorToCylidnricalPorePairScore
,
IMP::npctransport::ExcludeZRangeSingletonScore
,
IMP::npctransport::HarmonicSpringSingletonScore
,
IMP::npctransport::HarmonicWellPairScore
,
IMP::npctransport::LinearSoftSpherePairScore
,
IMP::npctransport::LinearWellPairScore
,
IMP::npctransport::SitesPairScore
,
IMP::npctransport::SlabWithCylindricalPorePairScore
,
IMP::npctransport::SlabWithToroidalPorePairScore
,
IMP::npctransport::ZBiasSingletonScore
,
IMP::PairScore
,
IMP::QuadScore
,
IMP::score_functor::DistancePairScore< DistanceScoreT >
,
IMP::score_functor::SurfaceDistancePairScore< DistanceScoreT >
,
IMP::SingletonScore
,
IMP::spb::AttributeDistancePairScore
,
IMP::spb::KinkPairScore
,
IMP::spb::RigidBodyPackingScore
,
IMP::spb::TiltSingletonScore
,
IMP::TripletScore
evaluate_index() :
IMP::atom::AngleSingletonScore
,
IMP::atom::BondSingletonScore
,
IMP::atom::CoulombPairScore
,
IMP::atom::DihedralSingletonScore
,
IMP::atom::ImproperSingletonScore
,
IMP::atom::LennardJonesPairScore
,
IMP::container::MinimumPairScore
,
IMP::container::MinimumQuadScore
,
IMP::container::MinimumSingletonScore
,
IMP::container::MinimumTripletScore
,
IMP::core::AngleTripletScore
,
IMP::core::ClosePairsPairScore
,
IMP::core::DistancePairScore
,
IMP::core::GenericAttributeSingletonScore< UF >
,
IMP::core::GenericBoundingBox3DSingletonScore< UF >
,
IMP::core::GenericBoundingSphere3DSingletonScore< UF >
,
IMP::core::GenericDistanceToSingletonScore< UF >
,
IMP::core::HarmonicDistancePairScore
,
IMP::core::HarmonicSphereDistancePairScore
,
IMP::core::HarmonicSurfaceDepthPairScore
,
IMP::core::HarmonicSurfaceDistancePairScore
,
IMP::core::HarmonicSurfaceHeightPairScore
,
IMP::core::HarmonicUpperBoundSphereDiameterPairScore
,
IMP::core::HarmonicUpperBoundSphereDistancePairScore
,
IMP::core::KClosePairsPairScore
,
IMP::core::NormalizedSphereDistancePairScore
,
IMP::core::PredicateSingletonScore< Predicate, Score >
,
IMP::core::RefinedPairsPairScore
,
IMP::core::RigidBodyAnglePairScore
,
IMP::core::SoftSpherePairScore
,
IMP::core::SoftSubSurfacePairScore
,
IMP::core::SoftSuperSurfacePairScore
,
IMP::core::SphereDistancePairScore
,
IMP::core::SphereDistanceToSingletonScore
,
IMP::core::SurfaceDepthPairScore
,
IMP::core::SurfaceDistancePairScore
,
IMP::core::SurfaceHeightPairScore
,
IMP::core::TransformedDistancePairScore
,
IMP::core::TypedPairScore
,
IMP::core::WeightedSphereDistancePairScore
,
IMP::example::ExamplePairScore
,
IMP::isd::RepulsiveDistancePairScore
,
IMP::misc::LogPairScore
,
IMP::misc::LowestRefinedPairScore
,
IMP::misc::SoftCylinderPairScore
,
IMP::npc::MinimumSphereDistancePairScore
,
IMP::npctransport::AnchorToCylidnricalPorePairScore
,
IMP::npctransport::ExcludeZRangeSingletonScore
,
IMP::npctransport::HarmonicSpringSingletonScore
,
IMP::npctransport::HarmonicWellPairScore
,
IMP::npctransport::LinearInteractionPairScore
,
IMP::npctransport::LinearSoftSpherePairScore
,
IMP::npctransport::LinearWellPairScore
,
IMP::npctransport::SitesPairScore
,
IMP::npctransport::SlabWithCylindricalPorePairScore
,
IMP::npctransport::SlabWithToroidalPorePairScore
,
IMP::npctransport::ZBiasSingletonScore
,
IMP::PairScore
,
IMP::QuadScore
,
IMP::score_functor::DistancePairScore< DistanceScoreT >
,
IMP::score_functor::SurfaceDistancePairScore< DistanceScoreT >
,
IMP::SingletonScore
,
IMP::spb::AttributeDistancePairScore
,
IMP::spb::KinkPairScore
,
IMP::spb::RigidBodyPackingScore
,
IMP::spb::TiltSingletonScore
,
IMP::TripletScore
evaluate_indexes() :
IMP::atom::AngleSingletonScore
,
IMP::atom::BondSingletonScore
,
IMP::atom::CoulombPairScore
,
IMP::atom::DihedralSingletonScore
,
IMP::atom::ImproperSingletonScore
,
IMP::atom::LennardJonesPairScore
,
IMP::container::MinimumPairScore
,
IMP::container::MinimumQuadScore
,
IMP::container::MinimumSingletonScore
,
IMP::container::MinimumTripletScore
,
IMP::core::AngleTripletScore
,
IMP::core::ClosePairsPairScore
,
IMP::core::GenericAttributeSingletonScore< UF >
,
IMP::core::GenericBoundingBox3DSingletonScore< UF >
,
IMP::core::GenericBoundingSphere3DSingletonScore< UF >
,
IMP::core::GenericDistanceToSingletonScore< UF >
,
IMP::core::HarmonicUpperBoundSphereDiameterPairScore
,
IMP::core::KClosePairsPairScore
,
IMP::core::NormalizedSphereDistancePairScore
,
IMP::core::PredicateSingletonScore< Predicate, Score >
,
IMP::core::RefinedPairsPairScore
,
IMP::core::RigidBodyAnglePairScore
,
IMP::core::SphereDistanceToSingletonScore
,
IMP::core::TransformedDistancePairScore
,
IMP::core::TypedPairScore
,
IMP::core::WeightedSphereDistancePairScore
,
IMP::example::ExamplePairScore
,
IMP::isd::RepulsiveDistancePairScore
,
IMP::misc::LowestRefinedPairScore
,
IMP::misc::SoftCylinderPairScore
,
IMP::npc::MinimumSphereDistancePairScore
,
IMP::npctransport::AnchorToCylidnricalPorePairScore
,
IMP::npctransport::ExcludeZRangeSingletonScore
,
IMP::npctransport::HarmonicSpringSingletonScore
,
IMP::npctransport::HarmonicWellPairScore
,
IMP::npctransport::LinearInteractionPairScore
,
IMP::npctransport::LinearSoftSpherePairScore
,
IMP::npctransport::LinearWellPairScore
,
IMP::npctransport::SitesPairScore
,
IMP::npctransport::SlabWithCylindricalPorePairScore
,
IMP::npctransport::SlabWithToroidalPorePairScore
,
IMP::npctransport::ZBiasSingletonScore
,
IMP::PairScore
,
IMP::QuadScore
,
IMP::score_functor::DistancePairScore< DistanceScoreT >
,
IMP::score_functor::SurfaceDistancePairScore< DistanceScoreT >
,
IMP::SingletonScore
,
IMP::spb::AttributeDistancePairScore
,
IMP::spb::KinkPairScore
,
IMP::spb::RigidBodyPackingScore
,
IMP::spb::TiltSingletonScore
,
IMP::TripletScore
evaluate_second_derivative_FM_FM() :
IMP::isd::MultivariateFNormalSufficient
evaluate_second_derivative_FM_Sigma() :
IMP::isd::MultivariateFNormalSufficient
evaluate_second_derivative_Sigma_Sigma() :
IMP::isd::MultivariateFNormalSufficient
evaluate_site_contributions() :
IMP::npctransport::SitesPairScore
evaluate_site_contributions_with_internal_tables() :
IMP::npctransport::SitesPairScore
evaluate_with_derivative() :
IMP::core::ClosedCubicSpline
,
IMP::core::Cosine
,
IMP::core::Harmonic
,
IMP::core::HarmonicLowerBound
,
IMP::core::HarmonicUpperBound
,
IMP::core::HarmonicWell
,
IMP::core::Linear
,
IMP::core::SurfaceTetheredChain
,
IMP::core::TruncatedHarmonic< DIRECTION >
,
IMP::core::WeightedSum
,
IMP::core::WeightedSumOfExponential
,
IMP::example::ExampleUnaryFunction
,
IMP::misc::FreelyJointedChain
,
IMP::misc::WormLikeChain
,
IMP::score_functor::ScoreUnaryFunction< Score, D >
,
IMP::spb::Gaussian
,
IMP::UnaryFunction
EventException() :
IMP::EventException
ExampleComplexRestraint() :
IMP::example::ExampleComplexRestraint
ExampleRestraint() :
IMP::example::ExampleRestraint
ExampleTemplateClassD() :
IMP::example::ExampleTemplateClassD< D >
ExampleUnaryFunction() :
IMP::example::ExampleUnaryFunction
exclude_coordinates() :
IMP.pmi.mmcif.ProtocolOutput
,
IMP.pmi1.mmcif.ProtocolOutput
ExcludedVolumeRestraint() :
IMP::core::ExcludedVolumeRestraint
ExcludeZRangeSingletonScore() :
IMP::npctransport::ExcludeZRangeSingletonScore
execute() :
IMP::kmeans::KMeans
execute_macro() :
IMP.pmi.macros.BuildSystem
ExtendedGridIndexD() :
IMP::algebra::ExtendedGridIndexD< D >