 |
|
IMP Reference Guide
2.11.1
The Integrative Modeling Platform
|
Base class for single-variate distributions that cache sufficient statistics. More...
#include <IMP/isd/distribution.h>
Inheritance diagram for IMP::isd::OneDimensionalSufficientDistribution:Base class for single-variate distributions that cache sufficient statistics.
Sufficient statistics are one or more statistics whose values are sufficient to describe the entire distribution. For the joint probability of many independent draws from a distribution, the set of all drawn values is a sufficient statistic, but minimally sufficient statistics (such as the mean and variance for a joint normal distribution) often exist, permitting one-time calculation and efficient use of memory.
Children must overload the following methods:
Definition at line 79 of file isd/distribution.h.
Public Member Functions | |
| OneDimensionalSufficientDistribution (std::string name="OneDimensionalSufficientDistribution %1%") | |
| Constructor. More... | |
| double | evaluate () const |
| Get negative log-density using cached sufficient statistics. More... | |
| double | get_density () const |
| Get probability density using cached sufficient statistics. More... | |
| Floats | get_sufficient_statistics () const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| void | update_sufficient_statistics (Floats vs) |
| Update cached sufficient statistics from data. More... | |
| Public Member Functions inherited from IMP::isd::Distribution | |
| Distribution (std::string name="Distribution %1%") | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Protected Member Functions | |
| virtual double | do_evaluate () const =0 |
| virtual double | do_get_density () const |
| virtual Floats | do_get_sufficient_statistics () const =0 |
| virtual void | do_update_sufficient_statistics (Floats vs)=0 |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
| IMP::isd::OneDimensionalSufficientDistribution::OneDimensionalSufficientDistribution | ( | std::string | name = "OneDimensionalSufficientDistribution %1%" | ) |
Constructor.
Definition at line 88 of file isd/distribution.h.
| double IMP::isd::OneDimensionalSufficientDistribution::evaluate | ( | ) | const |
Get negative log-density using cached sufficient statistics.
Definition at line 102 of file isd/distribution.h.
| double IMP::isd::OneDimensionalSufficientDistribution::get_density | ( | ) | const |
Get probability density using cached sufficient statistics.
Definition at line 105 of file isd/distribution.h.
|
virtual |
Get information about the module and version of the object.
Reimplemented from IMP::isd::Distribution.
Reimplemented in IMP::isd::FStudentT, IMP::isd::PenalizedComplexityPrior, and IMP::isd::FNormal.
Definition at line 107 of file isd/distribution.h.
| void IMP::isd::OneDimensionalSufficientDistribution::update_sufficient_statistics | ( | Floats | vs | ) |
Update cached sufficient statistics from data.
Definition at line 93 of file isd/distribution.h.