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PMI RNAPII Modeling Tutorial

Tutorial that demonstrates the modeling of RNA Polymerase II using Electron Microscopy density and chemical crosslinks

tickVerified to work with the latest stable IMP release (2.10.0). The files are also available at GitHub.
Additional software needed to use these files: IMP scikit-learn matplotlib install instructions

Anaconda logo To install the software needed to reproduce this system with the Anaconda Python command line tool (conda), run the following commands:

conda config --add channels salilab
conda install imp scikit-learn matplotlib

UCSF logo To set up the environment on the UCSF QB3 cluster to run this system, run:

module load imp python/scikit python/matplotlib
Tags chemical crosslinks EM density map PMI X-ray

IMP is a tool to generate structural models based on multiple sources of experimental data. A detailed explanation of IMP and integrative modeling is given here

This tutorial explores scripts that:

Last known good IMP version: build info build info

Running the Tutorial

See the IMP website for the tutorial text.