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IMP Reference Guide  develop.36b5e40f34,2024/10/14
The Integrative Modeling Platform
secondary_structure_reader.h File Reference

Functions to read PSIPRED/DSSP and encode as SSES. More...

#include <IMP/atom/atom_config.h>
#include <IMP/atom/Hierarchy.h>
#include <IMP/atom/Atom.h>
#include <IMP/atom/SecondaryStructureResidue.h>
#include <IMP/file.h>
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Namespaces

 IMP
 Base functionality and abstract base classes for representation, scoring and sampling.
 
 IMP::atom
 Functionality for loading, creating, manipulating and scoring atomic structures.
 

PSIPRED reading

Reads in PSIPRED results and decorates particles as SecondaryStructureResidues. Currently assuming order of ps matches file.

SecondaryStructureResidues IMP::atom::read_psipred (TextInput inf, Model *mdl)
 
SecondaryStructureResidues IMP::atom::read_psipred (TextInput inf, Particles ps)
 

Detailed Description

Functions to read PSIPRED/DSSP and encode as SSES.

Copyright 2007-2022 IMP Inventors. All rights reserved.

Definition in file secondary_structure_reader.h.