rotamer/__init__.py

# This file was automatically generated by SWIG (https://www.swig.org).
# Version 4.3.1
#
# Do not make changes to this file unless you know what you are doing - modify
# the SWIG interface file instead.


# This wrapper is part of IMP,
# Copyright 2007-2025 IMP Inventors. All rights reserved.




from sys import version_info as _swig_python_version_info
import _IMP_rotamer

try:
    import builtins as __builtin__
except ImportError:
    import __builtin__

def _swig_repr(self):
    try:
        strthis = "proxy of " + self.this.__repr__()
    except __builtin__.Exception:
        strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)


def _swig_setattr_nondynamic_instance_variable(set):
    def set_instance_attr(self, name, value):
        if name == "this":
            set(self, name, value)
        elif name == "thisown":
            self.this.own(value)
        elif hasattr(self, name) and isinstance(getattr(type(self), name), property):
            set(self, name, value)
        else:
            raise AttributeError("You cannot add instance attributes to %s" % self)
    return set_instance_attr


def _swig_setattr_nondynamic_class_variable(set):
    def set_class_attr(cls, name, value):
        if hasattr(cls, name) and not isinstance(getattr(cls, name), property):
            set(cls, name, value)
        else:
            raise AttributeError("You cannot add class attributes to %s" % cls)
    return set_class_attr


def _swig_add_metaclass(metaclass):
    """Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
    def wrapper(cls):
        return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
    return wrapper


class _SwigNonDynamicMeta(type):
    """Meta class to enforce nondynamic attributes (no new attributes) for a class"""
    __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)


import weakref

class IMP_ROTAMER_SwigPyIterator(object):
    r"""Proxy of C++ swig::IMP_ROTAMER_SwigPyIterator class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _IMP_rotamer.delete_IMP_ROTAMER_SwigPyIterator

    def value(self):
        r"""value(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_value(self)

    def incr(self, n=1):
        r"""incr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_incr(self, n)

    def decr(self, n=1):
        r"""decr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_decr(self, n)

    def distance(self, x):
        r"""distance(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_distance(self, x)

    def equal(self, x):
        r"""equal(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_equal(self, x)

    def copy(self):
        r"""copy(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_copy(self)

    def next(self):
        r"""next(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_next(self)

    def __next__(self):
        r"""__next__(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___next__(self)

    def previous(self):
        r"""previous(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_previous(self)

    def advance(self, n):
        r"""advance(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_advance(self, n)

    def __eq__(self, x):
        r"""__eq__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___eq__(self, x)

    def __ne__(self, x):
        r"""__ne__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___ne__(self, x)

    def __iadd__(self, n):
        r"""__iadd__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___iadd__(self, n)

    def __isub__(self, n):
        r"""__isub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___isub__(self, n)

    def __add__(self, n):
        r"""__add__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___add__(self, n)

    def __sub__(self, *args):
        r"""
        __sub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator
        __sub__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t
        """
        return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___sub__(self, *args)
    def __iter__(self):
        return self

# Register IMP_ROTAMER_SwigPyIterator in _IMP_rotamer:
_IMP_rotamer.IMP_ROTAMER_SwigPyIterator_swigregister(IMP_ROTAMER_SwigPyIterator)

_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]

IMP_DEBUG = _IMP_rotamer.IMP_DEBUG

IMP_RELEASE = _IMP_rotamer.IMP_RELEASE

IMP_SILENT = _IMP_rotamer.IMP_SILENT

IMP_PROGRESS = _IMP_rotamer.IMP_PROGRESS

IMP_TERSE = _IMP_rotamer.IMP_TERSE

IMP_VERBOSE = _IMP_rotamer.IMP_VERBOSE

IMP_MEMORY = _IMP_rotamer.IMP_MEMORY

IMP_NONE = _IMP_rotamer.IMP_NONE

IMP_USAGE = _IMP_rotamer.IMP_USAGE

IMP_INTERNAL = _IMP_rotamer.IMP_INTERNAL

IMP_KERNEL_HAS_LOG4CXX = _IMP_rotamer.IMP_KERNEL_HAS_LOG4CXX

IMP_COMPILER_HAS_CEREAL_RAW_POINTER = _IMP_rotamer.IMP_COMPILER_HAS_CEREAL_RAW_POINTER

IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_rotamer.IMP_COMPILER_HAS_DEBUG_VECTOR

IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_rotamer.IMP_COMPILER_HAS_RANDOM_SHUFFLE

IMP_COMPILER_HAS_THREE_WAY = _IMP_rotamer.IMP_COMPILER_HAS_THREE_WAY

IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_RANDOM

IMP_KERNEL_HAS_NUMPY = _IMP_rotamer.IMP_KERNEL_HAS_NUMPY

IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_SYSTEM

IMP_KERNEL_HAS_GPERFTOOLS = _IMP_rotamer.IMP_KERNEL_HAS_GPERFTOOLS

IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER

IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER

IMPKERNEL_SHOW_WARNINGS = _IMP_rotamer.IMPKERNEL_SHOW_WARNINGS


import sys
class _DirectorObjects:
    """@internal Simple class to keep references to director objects
       to prevent premature deletion."""
    def __init__(self):
        self._objects = []
    def register(self, obj):
        """Take a reference to a director object; will only work for
           refcounted C++ classes"""
        if hasattr(obj, 'get_ref_count'):
            self._objects.append(obj)
    def cleanup(self):
        """Only drop our reference and allow cleanup by Python if no other
           Python references exist (we hold 3 references: one in self._objects,
           one in x, and one in the argument list for getrefcount) *and* no
           other C++ references exist (the Python object always holds one)"""
        objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
                                         or x.get_ref_count() > 1]
# Do in two steps so the references are kept until the end of the
# function (deleting references may trigger a fresh call to this method)
        self._objects = objs
    def get_object_count(self):
        """Get number of director objects (useful for testing only)"""
        return len(self._objects)
_director_objects = _DirectorObjects()

class _ostream(object):
    r"""Proxy of C++ std::ostream class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined")
    __repr__ = _swig_repr

    def write(self, osa_buf):
        r"""write(_ostream self, char const * osa_buf)"""
        return _IMP_rotamer._ostream_write(self, osa_buf)

# Register _ostream in _IMP_rotamer:
_IMP_rotamer._ostream_swigregister(_ostream)
IMP_C_OPEN_BINARY = _IMP_rotamer.IMP_C_OPEN_BINARY

import IMP
IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_FILESYSTEM

IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS

IMP_CGAL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_RANDOM

IMP_CGAL_HAS_NUMPY = _IMP_rotamer.IMP_CGAL_HAS_NUMPY

IMPCGAL_SHOW_WARNINGS = _IMP_rotamer.IMPCGAL_SHOW_WARNINGS

import IMP.cgal
IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_IMP_CGAL

IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM

IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS

IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_RANDOM

IMP_ALGEBRA_HAS_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_CGAL

IMP_ALGEBRA_HAS_NUMPY = _IMP_rotamer.IMP_ALGEBRA_HAS_NUMPY

IMP_ALGEBRA_HAS_ANN = _IMP_rotamer.IMP_ALGEBRA_HAS_ANN

IMPALGEBRA_SHOW_WARNINGS = _IMP_rotamer.IMPALGEBRA_SHOW_WARNINGS

import IMP.algebra
IMP_DISPLAY_HAS_IMP_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_IMP_CGAL

IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_FILESYSTEM

IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS

IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_RANDOM

IMP_DISPLAY_HAS_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_CGAL

IMP_DISPLAY_HAS_NUMPY = _IMP_rotamer.IMP_DISPLAY_HAS_NUMPY

IMPDISPLAY_SHOW_WARNINGS = _IMP_rotamer.IMPDISPLAY_SHOW_WARNINGS

import IMP.display
IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL

IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM

IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS

IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM

IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_CGAL

IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_HDF5

IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_NUMPY

IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_rotamer.IMPSCOREFUNCTOR_SHOW_WARNINGS

import IMP.score_functor
IMP_CORE_HAS_IMP_CGAL = _IMP_rotamer.IMP_CORE_HAS_IMP_CGAL

IMP_CORE_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CORE_HAS_IMP_KERNEL

IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_FILESYSTEM

IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS

IMP_CORE_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CORE_HAS_BOOST_RANDOM

IMP_CORE_HAS_CGAL = _IMP_rotamer.IMP_CORE_HAS_CGAL

IMP_CORE_HAS_HDF5 = _IMP_rotamer.IMP_CORE_HAS_HDF5

IMP_CORE_HAS_NUMPY = _IMP_rotamer.IMP_CORE_HAS_NUMPY

IMPCORE_SHOW_WARNINGS = _IMP_rotamer.IMPCORE_SHOW_WARNINGS

import IMP.core
IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_ALGEBRA

IMP_CONTAINER_HAS_IMP_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_CGAL

IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_DISPLAY

IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_KERNEL

IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR

IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_FILESYSTEM

IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS

IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_RANDOM

IMP_CONTAINER_HAS_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_CGAL

IMP_CONTAINER_HAS_HDF5 = _IMP_rotamer.IMP_CONTAINER_HAS_HDF5

IMP_CONTAINER_HAS_NUMPY = _IMP_rotamer.IMP_CONTAINER_HAS_NUMPY

IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_rotamer.IMP_CONTAINER_HAS_PYTHON_IHM

IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_rotamer.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP

IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_rotamer.IMP_CONTAINER_HAS_ROBIN_MAP

IMPCONTAINER_SHOW_WARNINGS = _IMP_rotamer.IMPCONTAINER_SHOW_WARNINGS

import IMP.container
IMP_ATOM_HAS_IMP_CGAL = _IMP_rotamer.IMP_ATOM_HAS_IMP_CGAL

IMP_ATOM_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ATOM_HAS_IMP_KERNEL

IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR

IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS

IMP_ATOM_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_RANDOM

IMP_ATOM_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ATOM_HAS_BOOST_REGEX

IMP_ATOM_HAS_CGAL = _IMP_rotamer.IMP_ATOM_HAS_CGAL

IMP_ATOM_HAS_HDF5 = _IMP_rotamer.IMP_ATOM_HAS_HDF5

IMP_ATOM_HAS_NUMPY = _IMP_rotamer.IMP_ATOM_HAS_NUMPY

IMP_ATOM_HAS_PYTHON_IHM = _IMP_rotamer.IMP_ATOM_HAS_PYTHON_IHM

IMPATOM_SHOW_WARNINGS = _IMP_rotamer.IMPATOM_SHOW_WARNINGS

IMP_ATOM_TYPE_INDEX = _IMP_rotamer.IMP_ATOM_TYPE_INDEX

IMP_RESIDUE_TYPE_INDEX = _IMP_rotamer.IMP_RESIDUE_TYPE_INDEX

IMP_HIERARCHY_TYPE_INDEX = _IMP_rotamer.IMP_HIERARCHY_TYPE_INDEX

IMP_CHAIN_TYPE_INDEX = _IMP_rotamer.IMP_CHAIN_TYPE_INDEX

import IMP.atom
IMP_ROTAMER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_ALGEBRA

IMP_ROTAMER_HAS_IMP_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CGAL

IMP_ROTAMER_HAS_IMP_CONTAINER = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CONTAINER

IMP_ROTAMER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_DISPLAY

IMP_ROTAMER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_KERNEL

IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR

IMP_ROTAMER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_FILESYSTEM

IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS

IMP_ROTAMER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_RANDOM

IMP_ROTAMER_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_REGEX

IMP_ROTAMER_HAS_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_CGAL

IMP_ROTAMER_HAS_HDF5 = _IMP_rotamer.IMP_ROTAMER_HAS_HDF5

IMP_ROTAMER_HAS_NUMPY = _IMP_rotamer.IMP_ROTAMER_HAS_NUMPY

IMP_ROTAMER_HAS_PYTHON_IHM = _IMP_rotamer.IMP_ROTAMER_HAS_PYTHON_IHM

IMPROTAMER_SHOW_WARNINGS = _IMP_rotamer.IMPROTAMER_SHOW_WARNINGS


RotamerAngleTuples=list
_plural_types.append("RotamerAngleTuples")
_value_types.append("RotamerAngleTuple")


ResidueRotamers=list
_plural_types.append("ResidueRotamers")
_value_types.append("ResidueRotamer")


_object_types.append("RotamerLibrary")


def _object_cast_to_RotamerLibrary(o):
    r"""_object_cast_to_RotamerLibrary(Object o) -> RotamerLibrary"""
    return _IMP_rotamer._object_cast_to_RotamerLibrary(o)

_object_types.append("RotamerCalculator")


def _object_cast_to_RotamerCalculator(o):
    r"""_object_cast_to_RotamerCalculator(Object o) -> RotamerCalculator"""
    return _IMP_rotamer._object_cast_to_RotamerCalculator(o)
class RotamerAngleTuple(object):
    r"""Proxy of C++ IMP::rotamer::RotamerAngleTuple class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, *args):
        r"""
        __init__(RotamerAngleTuple self) -> RotamerAngleTuple
        __init__(RotamerAngleTuple self, float chi1, float chi2, float chi3, float chi4, float probability) -> RotamerAngleTuple
        """
        _IMP_rotamer.RotamerAngleTuple_swiginit(self, _IMP_rotamer.new_RotamerAngleTuple(*args))

    def get_chi1(self):
        r"""get_chi1(RotamerAngleTuple self) -> float"""
        return _IMP_rotamer.RotamerAngleTuple_get_chi1(self)

    def get_chi2(self):
        r"""get_chi2(RotamerAngleTuple self) -> float"""
        return _IMP_rotamer.RotamerAngleTuple_get_chi2(self)

    def get_chi3(self):
        r"""get_chi3(RotamerAngleTuple self) -> float"""
        return _IMP_rotamer.RotamerAngleTuple_get_chi3(self)

    def get_chi4(self):
        r"""get_chi4(RotamerAngleTuple self) -> float"""
        return _IMP_rotamer.RotamerAngleTuple_get_chi4(self)

    def get_probability(self):
        r"""get_probability(RotamerAngleTuple self) -> float"""
        return _IMP_rotamer.RotamerAngleTuple_get_probability(self)

    def show(self, *args):
        r"""show(RotamerAngleTuple self, _ostream out=std::cout)"""
        return _IMP_rotamer.RotamerAngleTuple_show(self, *args)

    def __str__(self):
        r"""__str__(RotamerAngleTuple self) -> std::string"""
        return _IMP_rotamer.RotamerAngleTuple___str__(self)

    def __repr__(self):
        r"""__repr__(RotamerAngleTuple self) -> std::string"""
        return _IMP_rotamer.RotamerAngleTuple___repr__(self)

    def _get_as_binary(self):
        r"""_get_as_binary(RotamerAngleTuple self) -> PyObject *"""
        return _IMP_rotamer.RotamerAngleTuple__get_as_binary(self)

    def _set_from_binary(self, p):
        r"""_set_from_binary(RotamerAngleTuple self, PyObject * p)"""
        return _IMP_rotamer.RotamerAngleTuple__set_from_binary(self, p)

    def __getstate__(self):
        p = self._get_as_binary()
        if len(self.__dict__) > 1:
            d = self.__dict__.copy()
            del d['this']
            p = (d, p)
        return p

    def __setstate__(self, p):
        if not hasattr(self, 'this'):
            self.__init__()
        if isinstance(p, tuple):
            d, p = p
            self.__dict__.update(d)
        return self._set_from_binary(p)

    __swig_destroy__ = _IMP_rotamer.delete_RotamerAngleTuple

# Register RotamerAngleTuple in _IMP_rotamer:
_IMP_rotamer.RotamerAngleTuple_swigregister(RotamerAngleTuple)
class RotamerLibrary(IMP.Object):
    r"""Proxy of C++ IMP::rotamer::RotamerLibrary class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, angle_step=10):
        r"""__init__(RotamerLibrary self, unsigned int angle_step=10) -> RotamerLibrary"""
        _IMP_rotamer.RotamerLibrary_swiginit(self, _IMP_rotamer.new_RotamerLibrary(angle_step))

    def get_rotamers(self, residue, phi, psi, probability_thr):
        r"""get_rotamers(RotamerLibrary self, ResidueType residue, float phi, float psi, float probability_thr) -> IMP::rotamer::RotamerAngleTuples"""
        return _IMP_rotamer.RotamerLibrary_get_rotamers(self, residue, phi, psi, probability_thr)

    def read_library_file(self, lib_file_name):
        r"""read_library_file(RotamerLibrary self, std::string const & lib_file_name)"""
        return _IMP_rotamer.RotamerLibrary_read_library_file(self, lib_file_name)

    def get_version_info(self):
        r"""get_version_info(RotamerLibrary self) -> VersionInfo"""
        return _IMP_rotamer.RotamerLibrary_get_version_info(self)
    __swig_destroy__ = _IMP_rotamer.delete_RotamerLibrary

    def __str__(self):
        r"""__str__(RotamerLibrary self) -> std::string"""
        return _IMP_rotamer.RotamerLibrary___str__(self)

    def __repr__(self):
        r"""__repr__(RotamerLibrary self) -> std::string"""
        return _IMP_rotamer.RotamerLibrary___repr__(self)

    @staticmethod
    def get_from(o):
       return _object_cast_to_RotamerLibrary(o)


# Register RotamerLibrary in _IMP_rotamer:
_IMP_rotamer.RotamerLibrary_swigregister(RotamerLibrary)
class ResidueRotamer(object):
    r"""Proxy of C++ IMP::rotamer::ResidueRotamer class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, *args):
        r"""__init__(ResidueRotamer self, ResidueType rt=UNK) -> ResidueRotamer"""
        _IMP_rotamer.ResidueRotamer_swiginit(self, _IMP_rotamer.new_ResidueRotamer(*args))

    def get_coordinates(self, index, at):
        r"""get_coordinates(ResidueRotamer self, unsigned int index, AtomType at) -> Vector3D"""
        return _IMP_rotamer.ResidueRotamer_get_coordinates(self, index, at)

    def get_number_of_cases(self, at):
        r"""get_number_of_cases(ResidueRotamer self, AtomType at) -> unsigned int"""
        return _IMP_rotamer.ResidueRotamer_get_number_of_cases(self, at)

    def get_atom_exists(self, at):
        r"""get_atom_exists(ResidueRotamer self, AtomType at) -> bool"""
        return _IMP_rotamer.ResidueRotamer_get_atom_exists(self, at)

    def get_size(self):
        r"""get_size(ResidueRotamer self) -> unsigned int"""
        return _IMP_rotamer.ResidueRotamer_get_size(self)

    def get_probability(self, index):
        r"""get_probability(ResidueRotamer self, unsigned int index) -> double"""
        return _IMP_rotamer.ResidueRotamer_get_probability(self, index)

    def show(self, *args):
        r"""show(ResidueRotamer self, _ostream out=std::cout)"""
        return _IMP_rotamer.ResidueRotamer_show(self, *args)

    def __str__(self):
        r"""__str__(ResidueRotamer self) -> std::string"""
        return _IMP_rotamer.ResidueRotamer___str__(self)

    def __repr__(self):
        r"""__repr__(ResidueRotamer self) -> std::string"""
        return _IMP_rotamer.ResidueRotamer___repr__(self)
    __swig_destroy__ = _IMP_rotamer.delete_ResidueRotamer

# Register ResidueRotamer in _IMP_rotamer:
_IMP_rotamer.ResidueRotamer_swigregister(ResidueRotamer)
class RotamerCalculator(IMP.Object):
    r"""Proxy of C++ IMP::rotamer::RotamerCalculator class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, rl):
        r"""__init__(RotamerCalculator self, RotamerLibrary rl) -> RotamerCalculator"""
        _IMP_rotamer.RotamerCalculator_swiginit(self, _IMP_rotamer.new_RotamerCalculator(rl))

    def get_rotamer(self, rd, thr):
        r"""get_rotamer(RotamerCalculator self, Residue rd, double thr) -> ResidueRotamer"""
        return _IMP_rotamer.RotamerCalculator_get_rotamer(self, rd, thr)

    def get_version_info(self):
        r"""get_version_info(RotamerCalculator self) -> VersionInfo"""
        return _IMP_rotamer.RotamerCalculator_get_version_info(self)
    __swig_destroy__ = _IMP_rotamer.delete_RotamerCalculator

    def transform(self, protein, score, thr, K, num_iter):
        r"""transform(RotamerCalculator self, Hierarchy protein, PairScore score, double thr, double K, int num_iter)"""
        return _IMP_rotamer.RotamerCalculator_transform(self, protein, score, thr, K, num_iter)

    def __str__(self):
        r"""__str__(RotamerCalculator self) -> std::string"""
        return _IMP_rotamer.RotamerCalculator___str__(self)

    def __repr__(self):
        r"""__repr__(RotamerCalculator self) -> std::string"""
        return _IMP_rotamer.RotamerCalculator___repr__(self)

    @staticmethod
    def get_from(o):
       return _object_cast_to_RotamerCalculator(o)


# Register RotamerCalculator in _IMP_rotamer:
_IMP_rotamer.RotamerCalculator_swigregister(RotamerCalculator)

def get_module_name():
    r"""get_module_name() -> std::string const"""
    return _IMP_rotamer.get_module_name()

def get_module_version():
    r"""get_module_version() -> std::string const"""
    return _IMP_rotamer.get_module_version()

def get_example_path(fname):
    r"""get_example_path(std::string fname) -> std::string"""
    return _IMP_rotamer.get_example_path(fname)

def get_data_path(fname):
    r"""get_data_path(std::string fname) -> std::string"""
    return _IMP_rotamer.get_data_path(fname)

from . import _version_check
_version_check.check_version(get_module_version())
__version__ = get_module_version()