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IMP Reference Guide  develop.879b8d2544,2020/09/30
The Integrative Modeling Platform
display/display_log.py

A simple example of how to use one of the IMP.display.LogOptimizerStates.

1 ## \example display/display_log.py
2 # A simple example of how to use one of the IMP.display.LogOptimizerStates.
3 
4 import IMP.display
5 import IMP.core
6 import IMP.container
7 import sys
8 
9 IMP.setup_from_argv(sys.argv,
10  "Example of how to use one of the IMP.display.LogOptimizerStates")
11 
12 m = IMP.Model()
13 ps = IMP.core.create_xyzr_particles(m, 20, 5)
15 
16 # Write outputs into a single file.
18  m, IMP.display.PymolWriter("log_file.pym"))
19 # the logging occurs ever two frames
20 log.set_period(2)
22 g.set_name("my particles")
23 g.set_color(IMP.display.Color(1, 0, 0))
24 log.add_geometry(g)
25 
27 r.set_log_level(IMP.VERBOSE)
28 
30 o.set_scoring_function([r])
31 mv = IMP.core.BallMover(m, ps, 10)
32 o.add_mover(mv)
33 o.add_optimizer_state(log)
34 
35 o.optimize(1000)