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IMP Reference Guide
develop.5128fd965d,2024/12/03
The Integrative Modeling Platform
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This is the complete list of members for IMP::pmi::CrossLinkRestraintSet, including all inherited members.
| add_restraint(Restraint *obj) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| add_restraints(const Restraints &objs) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| clear_caches() | IMP::Object | virtual |
| clear_restraints() (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| create_current_decomposition() const | IMP::Restraint | |
| create_decomposition() const | IMP::Restraint | |
| create_scoring_function(double weight=1.0, double max=NO_MAX) const | IMP::Restraint | virtual |
| CrossLinkRestraintSet(Model *m, const std::string &name="CrossLinkRestraintSet %1%") (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
| CrossLinkRestraintSet() (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
| do_add_score_and_derivatives(ScoreAccumulator sa) const (defined in IMP::Restraint) | IMP::Restraint | protectedvirtual |
| do_add_score_and_derivatives_moved(ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const (defined in IMP::Restraint) | IMP::Restraint | protectedvirtual |
| do_create_current_decomposition() const | IMP::Restraint | protectedvirtual |
| do_create_decomposition() const | IMP::Restraint | protectedvirtual |
| do_destroy() | IMP::Object | protectedvirtual |
| do_get_inputs() const =0 | IMP::ModelObject | protectedpure virtual |
| do_get_interactions() const | IMP::ModelObject | protectedvirtual |
| do_get_outputs() const override | IMP::Restraint | protectedvirtual |
| erase_restraint(unsigned int i) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| evaluate(bool calc_derivs) const | IMP::Restraint | |
| evaluate_if_below(bool calc_derivatives, double max) const | IMP::Restraint | |
| evaluate_if_good(bool calc_derivatives) const | IMP::Restraint | |
| evaluate_moved(bool calc_derivs, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const | IMP::Restraint | |
| evaluate_moved_if_below(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const | IMP::Restraint | |
| evaluate_moved_if_good(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const | IMP::Restraint | |
| get_check_level() const (defined in IMP::Object) | IMP::Object | |
| get_dynamic_info() const | IMP::Restraint | virtual |
| get_has_dependencies() const | IMP::ModelObject | |
| get_has_required_score_states() const | IMP::ModelObject | |
| get_has_restraints() (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| get_inputs() const | IMP::ModelObject | |
| get_interactions() const | IMP::ModelObject | |
| get_is_aggregate() const | IMP::Restraint | |
| get_last_last_score() const | IMP::Restraint | |
| get_last_score() const override | IMP::RestraintSet | virtual |
| get_log_level() const (defined in IMP::Object) | IMP::Object | |
| get_maximum_score() const (defined in IMP::Restraint) | IMP::Restraint | |
| get_model() const (defined in IMP::ModelObject) | IMP::ModelObject | |
| get_name() const (defined in IMP::Object) | IMP::Object | |
| get_non_sets_and_sets() const | IMP::RestraintSet | |
| get_number_of_restraints() const (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| get_outputs() const | IMP::ModelObject | |
| get_required_score_states() const | IMP::ModelObject | |
| get_restraint(unsigned int i) const (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| get_restraints() const (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| get_score() const | IMP::Restraint | |
| get_static_info() const override | IMP::pmi::CrossLinkRestraintSet | virtual |
| get_type_name() const override (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | virtual |
| get_version_info() const override | IMP::pmi::CrossLinkRestraintSet | virtual |
| get_was_good() const | IMP::Restraint | |
| get_weight() const (defined in IMP::Restraint) | IMP::Restraint | |
| handle_set_has_required_score_states(bool) | IMP::ModelObject | protectedvirtual |
| is_aggregate_ (defined in IMP::Restraint) | IMP::Restraint | protected |
| ModelObject(Model *m, std::string name) (defined in IMP::ModelObject) | IMP::ModelObject | |
| ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
| NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
| Object(std::string name) | IMP::Object | protected |
| remove_restraint(Restraint *d) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| remove_restraints(const Restraints &d) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| reserve_restraints(unsigned int sz) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| Restraint(Model *m, std::string name) | IMP::Restraint | |
| Restraint() | IMP::Restraint | |
| restraints | IMP::RestraintSet | |
| RestraintSet(Model *m, double weight, const std::string &name="RestraintSet %1%") | IMP::RestraintSet | |
| RestraintSet(Model *m, const std::string &name="RestraintSet %1%") | IMP::RestraintSet | |
| RestraintSet(const RestraintsTemp &rs, double weight, const std::string &name="RestraintSet %1%") | IMP::RestraintSet | |
| RestraintSet() (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| set_check_level(CheckLevel l) | IMP::Object | |
| set_has_dependencies(bool tf) | IMP::ModelObject | |
| set_has_required_score_states(bool tf) | IMP::ModelObject | |
| set_linker_auth_name(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
| set_linker_chemical_name(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
| set_linker_inchi(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
| set_linker_inchi_key(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
| set_linker_smiles(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
| set_linker_smiles_canonical(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
| set_log_level(LogLevel l) | IMP::Object | |
| set_maximum_score(double s) (defined in IMP::Restraint) | IMP::Restraint | |
| set_metadata(std::string filename, double length, double slope) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
| set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
| set_restraints(const Restraints &ps) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| set_restraints_order(const Restraints &objs) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
| set_was_used(bool tf) const | IMP::Object | |
| set_weight(Float weight) (defined in IMP::Restraint) | IMP::Restraint | |
| show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
| unprotected_evaluate(DerivativeAccumulator *da) const override | IMP::RestraintSet | virtual |
| unprotected_evaluate_if_below(DerivativeAccumulator *da, double max) const | IMP::Restraint | virtual |
| unprotected_evaluate_if_good(DerivativeAccumulator *da, double max) const | IMP::Restraint | virtual |
| unprotected_evaluate_moved(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const | IMP::Restraint | virtual |
| unprotected_evaluate_moved_if_below(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint) | IMP::Restraint | virtual |
| unprotected_evaluate_moved_if_good(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint) | IMP::Restraint | virtual |
| ~CrossLinkRestraintSet() (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | virtual |
| ~ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
| ~Object() (defined in IMP::Object) | IMP::Object | virtual |
| ~RestraintSet() (defined in IMP::RestraintSet) | IMP::RestraintSet | virtual |