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IMP Reference Guide
develop.63b38c487d,2024/12/21
The Integrative Modeling Platform
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This is the complete list of members for IMP::npctransport::SitesPairScore, including all inherited members.
| Argument typedef (defined in IMP::PairScore) | IMP::PairScore | |
| clear_caches() | IMP::Object | virtual |
| create_current_decomposition(Model *m, const ParticleIndexPair &vt) const | IMP::PairScore | |
| do_create_current_decomposition(Model *m, const ParticleIndexPair &vt) const | IMP::PairScore | protectedvirtual |
| do_destroy() | IMP::Object | protectedvirtual |
| do_get_inputs(Model *m, const ParticleIndexes &pis) const override | IMP::npctransport::SitesPairScore | virtual |
| evaluate_if_good_index(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const (defined in IMP::npctransport::LinearInteractionPairScore) | IMP::npctransport::LinearInteractionPairScore | |
| IMP::PairScore::evaluate_if_good_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const | IMP::PairScore | virtual |
| evaluate_if_good_indexes(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const override | IMP::npctransport::SitesPairScore | virtual |
| evaluate_index(Model *m, const ParticleIndexPair &p, DerivativeAccumulator *da) const override | IMP::npctransport::SitesPairScore | virtual |
| IMP::npctransport::LinearInteractionPairScore::evaluate_index(algebra::Sphere3D const &s0, algebra::Sphere3D const &s1, algebra::Sphere3D &ds0, algebra::Sphere3D &ds1, DerivativeAccumulator *da) const | IMP::npctransport::LinearInteractionPairScore | protected |
| evaluate_indexes(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const overridefinal | IMP::npctransport::SitesPairScore | virtual |
| evaluate_indexes_delta(Model *m, const ParticleIndexPairs &o, DerivativeAccumulator *da, const std::vector< unsigned > &indexes, std::vector< double > &score) const | IMP::PairScore | virtual |
| evaluate_indexes_scores(Model *m, const ParticleIndexPairs &o, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound, std::vector< double > &score) const | IMP::PairScore | virtual |
| evaluate_site_contributions(Model *m, const ParticleIndexPair &pip, DerivativeAccumulator *da, boost::tuple< unsigned int, std::vector< unsigned int >, std::vector< unsigned int >, bool >(*contacts_accumulator)) const | IMP::npctransport::SitesPairScore | |
| evaluate_site_contributions_with_internal_tables(algebra::Sphere3D const *spheres_table, double const **quaternions_tables, algebra::Sphere3D *sphere_derivatives_table, double **torques_tables, const ParticleIndexPair &pip, DerivativeAccumulator *da, boost::tuple< unsigned int, std::vector< unsigned int >, std::vector< unsigned int >, bool >(*contacts_accumulator)=nullptr) const | IMP::npctransport::SitesPairScore | |
| get_check_level() const (defined in IMP::Object) | IMP::Object | |
| get_evaluation_cache() const (defined in IMP::npctransport::LinearInteractionPairScore) | IMP::npctransport::LinearInteractionPairScore | |
| get_inputs(Model *m, const ParticleIndexes &pis) const | IMP::ParticleInputs | |
| get_k_attraction() const | IMP::npctransport::LinearInteractionPairScore | |
| get_k_repulsion() const | IMP::npctransport::LinearInteractionPairScore | |
| get_log_level() const (defined in IMP::Object) | IMP::Object | |
| get_name() const (defined in IMP::Object) | IMP::Object | |
| get_parameters() const (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | |
| get_range_attraction() const | IMP::npctransport::LinearInteractionPairScore | |
| get_sites_k() const | IMP::npctransport::SitesPairScore | |
| get_sites_range() const | IMP::npctransport::SitesPairScore | |
| get_type_name() const override (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | virtual |
| get_version_info() const override | IMP::npctransport::SitesPairScore | virtual |
| IndexArgument typedef (defined in IMP::PairScore) | IMP::PairScore | |
| LinearInteractionPairScore(double k_rep, double range_attr, double k_attr, std::string name="LinearIDPairScore%1%") | IMP::npctransport::LinearInteractionPairScore | |
| Modifier typedef (defined in IMP::PairScore) | IMP::PairScore | |
| NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
| Object(std::string name) | IMP::Object | protected |
| PairScore(std::string name="PairScore %1%") (defined in IMP::PairScore) | IMP::PairScore | |
| PassArgument typedef (defined in IMP::PairScore) | IMP::PairScore | |
| PassIndexArgument typedef (defined in IMP::PairScore) | IMP::PairScore | |
| set_check_level(CheckLevel l) | IMP::Object | |
| set_k_attraction(double k_attr) | IMP::npctransport::LinearInteractionPairScore | |
| set_k_repulsion(double k_rep) | IMP::npctransport::LinearInteractionPairScore | |
| set_log_level(LogLevel l) | IMP::Object | |
| set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
| set_sites(const algebra::Sphere3Ds &sites0, const algebra::Sphere3Ds &sites1) (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | |
| set_sites0(const algebra::Sphere3Ds &sites0) (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | |
| set_sites1(const algebra::Sphere3Ds &sites1) (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | |
| set_was_used(bool tf) const | IMP::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
| SitesPairScore(double range, double k, double sigma0_deg, double sigma1_deg, double range_nonspec_attraction, double k_nonspec_attraction, double k_nonspec_repulsion, const algebra::Sphere3Ds &sites0, const algebra::Sphere3Ds &sites1) | IMP::npctransport::SitesPairScore | |
| ~LinearInteractionPairScore() (defined in IMP::npctransport::LinearInteractionPairScore) | IMP::npctransport::LinearInteractionPairScore | virtual |
| ~Object() (defined in IMP::Object) | IMP::Object | virtual |
| ~ParticleInputs() (defined in IMP::ParticleInputs) | IMP::ParticleInputs | protectedvirtual |
| ~SitesPairScore() (defined in IMP::npctransport::SitesPairScore) | IMP::npctransport::SitesPairScore | virtual |