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IMP Reference Guide  develop.27926d84dc,2024/04/13
The Integrative Modeling Platform
IMP::isd::CysteineCrossLinkRestraint Member List

This is the complete list of members for IMP::isd::CysteineCrossLinkRestraint, including all inherited members.

add_contribution(ParticleIndexAdaptor p1, ParticleIndexAdaptor p2) (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
add_contribution(ParticleIndexes p1, ParticleIndexes p2) (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
clear_caches()IMP::Objectvirtual
create_current_decomposition() const IMP::Restraint
create_decomposition() const IMP::Restraint
create_scoring_function(double weight=1.0, double max=NO_MAX) const IMP::Restraintvirtual
CysteineCrossLinkRestraint(Model *m, ParticleIndexAdaptor beta, ParticleIndexAdaptor sigma, ParticleIndexAdaptor epsilon, ParticleIndexAdaptor weight, CrossLinkData *data, double fexp)IMP::isd::CysteineCrossLinkRestraint
CysteineCrossLinkRestraint(Model *m, ParticleIndexAdaptor beta, ParticleIndexAdaptor sigma, ParticleIndexAdaptor epsilon, ParticleIndexAdaptor weight, CrossLinkData *data, CysteineCrossLinkData *ccldata) (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
CysteineCrossLinkRestraint() (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
do_add_score_and_derivatives(ScoreAccumulator sa) const (defined in IMP::Restraint)IMP::Restraintprotectedvirtual
do_add_score_and_derivatives_moved(ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const (defined in IMP::Restraint)IMP::Restraintprotectedvirtual
do_create_current_decomposition() const IMP::Restraintprotectedvirtual
do_create_decomposition() const IMP::Restraintprotectedvirtual
do_destroy()IMP::Objectprotectedvirtual
do_get_inputs() const overrideIMP::isd::CysteineCrossLinkRestraintvirtual
do_get_interactions() const IMP::ModelObjectprotectedvirtual
do_get_outputs() const overrideIMP::Restraintprotectedvirtual
evaluate(bool calc_derivs) const IMP::Restraint
evaluate_if_below(bool calc_derivatives, double max) const IMP::Restraint
evaluate_if_good(bool calc_derivatives) const IMP::Restraint
evaluate_moved(bool calc_derivs, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const IMP::Restraint
evaluate_moved_if_below(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const IMP::Restraint
evaluate_moved_if_good(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const IMP::Restraint
get_CB_coordinates(const ParticleIndexes &ps) const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_check_level() const (defined in IMP::Object)IMP::Object
get_distances() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_dynamic_info() const IMP::Restraintvirtual
get_frequencies() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_has_dependencies() const IMP::ModelObject
get_has_required_score_states() const IMP::ModelObject
get_inputs() const IMP::ModelObject
get_interactions() const IMP::ModelObject
get_is_aggregate() const IMP::Restraint
get_last_last_score() const IMP::Restraint
get_last_score() const IMP::Restraintvirtual
get_log_level() const (defined in IMP::Object)IMP::Object
get_maximum_score() const (defined in IMP::Restraint)IMP::Restraint
get_model() const (defined in IMP::ModelObject)IMP::ModelObject
get_model_frequency() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_name() const (defined in IMP::Object)IMP::Object
get_normal_pdf(double mean, double sigma, double x) const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_number_of_contributions() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_outputs() const IMP::ModelObject
get_probability() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_required_score_states() const IMP::ModelObject
get_score() const IMP::Restraint
get_standard_error() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_static_info() const IMP::Restraintvirtual
get_truncated_normalization(double mean, double sigma) const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_type_name() const override (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraintvirtual
get_version_info() const overrideIMP::isd::CysteineCrossLinkRestraintvirtual
get_was_good() const IMP::Restraint
get_weight() const (defined in IMP::Restraint)IMP::Restraint
handle_set_has_required_score_states(bool)IMP::ModelObjectprotectedvirtual
is_aggregate_ (defined in IMP::Restraint)IMP::Restraintprotected
ModelObject(Model *m, std::string name) (defined in IMP::ModelObject)IMP::ModelObject
ModelObject() (defined in IMP::ModelObject)IMP::ModelObject
NonCopyable() (defined in IMP::NonCopyable)IMP::NonCopyableprotected
Object(std::string name)IMP::Objectprotected
Restraint(Model *m, std::string name)IMP::Restraint
Restraint()IMP::Restraint
set_check_level(CheckLevel l)IMP::Object
set_has_dependencies(bool tf)IMP::ModelObject
set_has_required_score_states(bool tf)IMP::ModelObject
set_log_level(LogLevel l)IMP::Object
set_maximum_score(double s) (defined in IMP::Restraint)IMP::Restraint
set_name(std::string name) (defined in IMP::Object)IMP::Object
set_was_used(bool tf) const IMP::Object
set_weight(Float weight) (defined in IMP::Restraint)IMP::Restraint
show(std::ostream &out=std::cout) const (defined in IMP::Object)IMP::Object
unprotected_evaluate(IMP::DerivativeAccumulator *accum) const overrideIMP::isd::CysteineCrossLinkRestraintvirtual
unprotected_evaluate_if_below(DerivativeAccumulator *da, double max) const IMP::Restraintvirtual
unprotected_evaluate_if_good(DerivativeAccumulator *da, double max) const IMP::Restraintvirtual
unprotected_evaluate_moved(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const IMP::Restraintvirtual
unprotected_evaluate_moved_if_below(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint)IMP::Restraintvirtual
unprotected_evaluate_moved_if_good(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint)IMP::Restraintvirtual
~CysteineCrossLinkRestraint() (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraintvirtual
~ModelObject() (defined in IMP::ModelObject)IMP::ModelObject
~Object() (defined in IMP::Object)IMP::Objectvirtual