| add_particle(Particle *obj) (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| add_particles(const Particles &objs) (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| clear_caches() | IMP::Object | virtual |
| clear_particles() (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| create_current_decomposition() const | IMP::Restraint | |
| create_decomposition() const | IMP::Restraint | |
| create_scoring_function(double weight=1.0, double max=NO_MAX) const | IMP::Restraint | virtual |
| do_add_score_and_derivatives(ScoreAccumulator sa) const (defined in IMP::Restraint) | IMP::Restraint | protectedvirtual |
| do_add_score_and_derivatives_moved(ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const (defined in IMP::Restraint) | IMP::Restraint | protectedvirtual |
| do_create_current_decomposition() const | IMP::Restraint | protectedvirtual |
| do_create_decomposition() const | IMP::Restraint | protectedvirtual |
| do_destroy() | IMP::Object | protectedvirtual |
| do_get_inputs() const override | IMP::em::EnvelopePenetrationRestraint | virtual |
| do_get_interactions() const | IMP::ModelObject | protectedvirtual |
| do_get_outputs() const override | IMP::Restraint | protectedvirtual |
| EnvelopePenetrationRestraint(Particles ps, DensityMap *em_map, Float threshold) | IMP::em::EnvelopePenetrationRestraint | |
| erase_particle(unsigned int i) (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| evaluate(bool calc_derivs) const | IMP::Restraint | |
| evaluate_if_below(bool calc_derivatives, double max) const | IMP::Restraint | |
| evaluate_if_good(bool calc_derivatives) const | IMP::Restraint | |
| evaluate_moved(bool calc_derivs, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const | IMP::Restraint | |
| evaluate_moved_if_below(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const | IMP::Restraint | |
| evaluate_moved_if_good(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const | IMP::Restraint | |
| get_check_level() const (defined in IMP::Object) | IMP::Object | |
| get_dynamic_info() const | IMP::Restraint | virtual |
| get_has_dependencies() const | IMP::ModelObject | |
| get_has_particles() (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| get_has_required_score_states() const | IMP::ModelObject | |
| get_inputs() const | IMP::ModelObject | |
| get_interactions() const | IMP::ModelObject | |
| get_is_aggregate() const | IMP::Restraint | |
| get_last_last_score() const | IMP::Restraint | |
| get_last_score() const | IMP::Restraint | virtual |
| get_log_level() const (defined in IMP::Object) | IMP::Object | |
| get_maximum_score() const (defined in IMP::Restraint) | IMP::Restraint | |
| get_model() const (defined in IMP::ModelObject) | IMP::ModelObject | |
| get_name() const (defined in IMP::Object) | IMP::Object | |
| get_number_of_particles() const (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| get_outputs() const | IMP::ModelObject | |
| get_particle(unsigned int i) const (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| get_particles() const (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| get_required_score_states() const | IMP::ModelObject | |
| get_score() const | IMP::Restraint | |
| get_static_info() const | IMP::Restraint | virtual |
| get_type_name() const override (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | virtual |
| get_version_info() const override | IMP::em::EnvelopePenetrationRestraint | virtual |
| get_was_good() const | IMP::Restraint | |
| get_weight() const (defined in IMP::Restraint) | IMP::Restraint | |
| handle_set_has_required_score_states(bool) | IMP::ModelObject | protectedvirtual |
| is_aggregate_ (defined in IMP::Restraint) | IMP::Restraint | protected |
| ModelObject(Model *m, std::string name) (defined in IMP::ModelObject) | IMP::ModelObject | |
| ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
| NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
| Object(std::string name) | IMP::Object | protected |
| particles | IMP::em::EnvelopePenetrationRestraint | |
| remove_particle(Particle *d) (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| remove_particles(const Particles &d) (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| reserve_particles(unsigned int sz) (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| Restraint(Model *m, std::string name) | IMP::Restraint | |
| Restraint() | IMP::Restraint | |
| set_check_level(CheckLevel l) | IMP::Object | |
| set_has_dependencies(bool tf) | IMP::ModelObject | |
| set_has_required_score_states(bool tf) | IMP::ModelObject | |
| set_log_level(LogLevel l) | IMP::Object | |
| set_maximum_score(double s) (defined in IMP::Restraint) | IMP::Restraint | |
| set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
| set_particles(const Particles &ps) (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| set_particles_order(const Particles &objs) (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | |
| set_was_used(bool tf) const | IMP::Object | |
| set_weight(Float weight) (defined in IMP::Restraint) | IMP::Restraint | |
| show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
| unprotected_evaluate(IMP::DerivativeAccumulator *accum) const override | IMP::em::EnvelopePenetrationRestraint | virtual |
| unprotected_evaluate_if_below(DerivativeAccumulator *da, double max) const | IMP::Restraint | virtual |
| unprotected_evaluate_if_good(DerivativeAccumulator *da, double max) const | IMP::Restraint | virtual |
| unprotected_evaluate_moved(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const | IMP::Restraint | virtual |
| unprotected_evaluate_moved_if_below(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint) | IMP::Restraint | virtual |
| unprotected_evaluate_moved_if_good(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint) | IMP::Restraint | virtual |
| ~EnvelopePenetrationRestraint() (defined in IMP::em::EnvelopePenetrationRestraint) | IMP::em::EnvelopePenetrationRestraint | virtual |
| ~ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
| ~Object() (defined in IMP::Object) | IMP::Object | virtual |
