17 import builtins
as __builtin__
21 strthis =
"proxy of " + self.this.__repr__()
22 except __builtin__.Exception:
24 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
27 def _swig_setattr_nondynamic_instance_variable(set):
28 def set_instance_attr(self, name, value):
30 set(self, name, value)
31 elif name ==
"thisown":
33 elif hasattr(self, name)
and isinstance(getattr(type(self), name), property):
34 set(self, name, value)
36 raise AttributeError(
"You cannot add instance attributes to %s" % self)
37 return set_instance_attr
40 def _swig_setattr_nondynamic_class_variable(set):
41 def set_class_attr(cls, name, value):
42 if hasattr(cls, name)
and not isinstance(getattr(cls, name), property):
45 raise AttributeError(
"You cannot add class attributes to %s" % cls)
49 class _SwigNonDynamicMeta(type):
50 """Meta class to enforce nondynamic attributes (no new attributes) for a class"""
51 __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
56 class IMP_BFF_SwigPyIterator(object):
57 r"""Proxy of C++ swig::IMP_BFF_SwigPyIterator class."""
59 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
61 def __init__(self, *args, **kwargs):
62 raise AttributeError(
"No constructor defined - class is abstract")
64 __swig_destroy__ = _IMP_bff.delete_IMP_BFF_SwigPyIterator
67 r"""value(IMP_BFF_SwigPyIterator self) -> PyObject *"""
68 return _IMP_bff.IMP_BFF_SwigPyIterator_value(self)
71 r"""incr(IMP_BFF_SwigPyIterator self, size_t n=1) -> IMP_BFF_SwigPyIterator"""
72 return _IMP_bff.IMP_BFF_SwigPyIterator_incr(self, n)
75 r"""decr(IMP_BFF_SwigPyIterator self, size_t n=1) -> IMP_BFF_SwigPyIterator"""
76 return _IMP_bff.IMP_BFF_SwigPyIterator_decr(self, n)
78 def distance(self, x):
79 r"""distance(IMP_BFF_SwigPyIterator self, IMP_BFF_SwigPyIterator x) -> ptrdiff_t"""
80 return _IMP_bff.IMP_BFF_SwigPyIterator_distance(self, x)
83 r"""equal(IMP_BFF_SwigPyIterator self, IMP_BFF_SwigPyIterator x) -> bool"""
84 return _IMP_bff.IMP_BFF_SwigPyIterator_equal(self, x)
87 r"""copy(IMP_BFF_SwigPyIterator self) -> IMP_BFF_SwigPyIterator"""
88 return _IMP_bff.IMP_BFF_SwigPyIterator_copy(self)
91 r"""__next__(IMP_BFF_SwigPyIterator self) -> PyObject *"""
92 return _IMP_bff.IMP_BFF_SwigPyIterator___next__(self)
95 r"""previous(IMP_BFF_SwigPyIterator self) -> PyObject *"""
96 return _IMP_bff.IMP_BFF_SwigPyIterator_previous(self)
99 r"""advance(IMP_BFF_SwigPyIterator self, ptrdiff_t n) -> IMP_BFF_SwigPyIterator"""
100 return _IMP_bff.IMP_BFF_SwigPyIterator_advance(self, n)
103 r"""__eq__(IMP_BFF_SwigPyIterator self, IMP_BFF_SwigPyIterator x) -> bool"""
104 return _IMP_bff.IMP_BFF_SwigPyIterator___eq__(self, x)
107 r"""__ne__(IMP_BFF_SwigPyIterator self, IMP_BFF_SwigPyIterator x) -> bool"""
108 return _IMP_bff.IMP_BFF_SwigPyIterator___ne__(self, x)
110 def __iadd__(self, n):
111 r"""__iadd__(IMP_BFF_SwigPyIterator self, ptrdiff_t n) -> IMP_BFF_SwigPyIterator"""
112 return _IMP_bff.IMP_BFF_SwigPyIterator___iadd__(self, n)
114 def __isub__(self, n):
115 r"""__isub__(IMP_BFF_SwigPyIterator self, ptrdiff_t n) -> IMP_BFF_SwigPyIterator"""
116 return _IMP_bff.IMP_BFF_SwigPyIterator___isub__(self, n)
118 def __add__(self, n):
119 r"""__add__(IMP_BFF_SwigPyIterator self, ptrdiff_t n) -> IMP_BFF_SwigPyIterator"""
120 return _IMP_bff.IMP_BFF_SwigPyIterator___add__(self, n)
122 def __sub__(self, *args):
124 __sub__(IMP_BFF_SwigPyIterator self, ptrdiff_t n) -> IMP_BFF_SwigPyIterator
125 __sub__(IMP_BFF_SwigPyIterator self, IMP_BFF_SwigPyIterator x) -> ptrdiff_t
127 return _IMP_bff.IMP_BFF_SwigPyIterator___sub__(self, *args)
132 _IMP_bff.IMP_BFF_SwigPyIterator_swigregister(IMP_BFF_SwigPyIterator)
139 IMP_DEBUG = _IMP_bff.IMP_DEBUG
141 IMP_RELEASE = _IMP_bff.IMP_RELEASE
143 IMP_SILENT = _IMP_bff.IMP_SILENT
145 IMP_PROGRESS = _IMP_bff.IMP_PROGRESS
147 IMP_TERSE = _IMP_bff.IMP_TERSE
149 IMP_VERBOSE = _IMP_bff.IMP_VERBOSE
151 IMP_MEMORY = _IMP_bff.IMP_MEMORY
153 IMP_NONE = _IMP_bff.IMP_NONE
155 IMP_USAGE = _IMP_bff.IMP_USAGE
157 IMP_INTERNAL = _IMP_bff.IMP_INTERNAL
159 IMP_KERNEL_HAS_LOG4CXX = _IMP_bff.IMP_KERNEL_HAS_LOG4CXX
161 IMP_COMPILER_HAS_CEREAL_RAW_POINTER = _IMP_bff.IMP_COMPILER_HAS_CEREAL_RAW_POINTER
163 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_bff.IMP_COMPILER_HAS_DEBUG_VECTOR
165 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_bff.IMP_COMPILER_HAS_RANDOM_SHUFFLE
167 IMP_COMPILER_HAS_THREE_WAY = _IMP_bff.IMP_COMPILER_HAS_THREE_WAY
169 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_bff.IMP_KERNEL_HAS_BOOST_RANDOM
171 IMP_KERNEL_HAS_NUMPY = _IMP_bff.IMP_KERNEL_HAS_NUMPY
173 IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_bff.IMP_KERNEL_HAS_BOOST_SYSTEM
175 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_bff.IMP_KERNEL_HAS_GPERFTOOLS
177 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_bff.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
179 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_bff.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
181 IMPKERNEL_SHOW_WARNINGS = _IMP_bff.IMPKERNEL_SHOW_WARNINGS
185 class _DirectorObjects:
186 """@internal Simple class to keep references to director objects
187 to prevent premature deletion."""
190 def register(self, obj):
191 """Take a reference to a director object; will only work for
192 refcounted C++ classes"""
193 if hasattr(obj,
'get_ref_count'):
194 self._objects.append(obj)
196 """Only drop our reference and allow cleanup by Python if no other
197 Python references exist (we hold 3 references: one in self._objects,
198 one in x, and one in the argument list for getrefcount) *and* no
199 other C++ references exist (the Python object always holds one)"""
200 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
201 or x.get_ref_count() > 1]
205 def get_object_count(self):
206 """Get number of director objects (useful for testing only)"""
207 return len(self._objects)
208 _director_objects = _DirectorObjects()
210 class _ostream(object):
211 r"""Proxy of C++ std::ostream class."""
213 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
215 def __init__(self, *args, **kwargs):
216 raise AttributeError(
"No constructor defined")
217 __repr__ = _swig_repr
219 def write(self, osa_buf):
220 r"""write(_ostream self, char const * osa_buf)"""
221 return _IMP_bff._ostream_write(self, osa_buf)
224 _IMP_bff._ostream_swigregister(_ostream)
225 IMP_C_OPEN_BINARY = _IMP_bff.IMP_C_OPEN_BINARY
228 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_bff.IMP_CGAL_HAS_BOOST_FILESYSTEM
230 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
232 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_bff.IMP_CGAL_HAS_BOOST_RANDOM
234 IMP_CGAL_HAS_NUMPY = _IMP_bff.IMP_CGAL_HAS_NUMPY
236 IMPCGAL_SHOW_WARNINGS = _IMP_bff.IMPCGAL_SHOW_WARNINGS
239 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_bff.IMP_ALGEBRA_HAS_IMP_CGAL
241 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_bff.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
243 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
245 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_bff.IMP_ALGEBRA_HAS_BOOST_RANDOM
247 IMP_ALGEBRA_HAS_CGAL = _IMP_bff.IMP_ALGEBRA_HAS_CGAL
249 IMP_ALGEBRA_HAS_NUMPY = _IMP_bff.IMP_ALGEBRA_HAS_NUMPY
251 IMP_ALGEBRA_HAS_ANN = _IMP_bff.IMP_ALGEBRA_HAS_ANN
253 IMPALGEBRA_SHOW_WARNINGS = _IMP_bff.IMPALGEBRA_SHOW_WARNINGS
256 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_bff.IMP_DISPLAY_HAS_IMP_CGAL
258 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_bff.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
260 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
262 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_bff.IMP_DISPLAY_HAS_BOOST_RANDOM
264 IMP_DISPLAY_HAS_CGAL = _IMP_bff.IMP_DISPLAY_HAS_CGAL
266 IMP_DISPLAY_HAS_NUMPY = _IMP_bff.IMP_DISPLAY_HAS_NUMPY
268 IMPDISPLAY_SHOW_WARNINGS = _IMP_bff.IMPDISPLAY_SHOW_WARNINGS
271 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_bff.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
273 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_bff.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
275 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
277 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_bff.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
279 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_bff.IMP_SCORE_FUNCTOR_HAS_CGAL
281 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_bff.IMP_SCORE_FUNCTOR_HAS_HDF5
283 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_bff.IMP_SCORE_FUNCTOR_HAS_NUMPY
285 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_bff.IMPSCOREFUNCTOR_SHOW_WARNINGS
288 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_bff.IMP_STATISTICS_HAS_IMP_CGAL
290 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_bff.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
292 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
294 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_bff.IMP_STATISTICS_HAS_BOOST_RANDOM
296 IMP_STATISTICS_HAS_CGAL = _IMP_bff.IMP_STATISTICS_HAS_CGAL
298 IMP_STATISTICS_HAS_NUMPY = _IMP_bff.IMP_STATISTICS_HAS_NUMPY
300 IMPSTATISTICS_SHOW_WARNINGS = _IMP_bff.IMPSTATISTICS_SHOW_WARNINGS
303 IMP_CORE_HAS_IMP_CGAL = _IMP_bff.IMP_CORE_HAS_IMP_CGAL
305 IMP_CORE_HAS_IMP_KERNEL = _IMP_bff.IMP_CORE_HAS_IMP_KERNEL
307 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_bff.IMP_CORE_HAS_BOOST_FILESYSTEM
309 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
311 IMP_CORE_HAS_BOOST_RANDOM = _IMP_bff.IMP_CORE_HAS_BOOST_RANDOM
313 IMP_CORE_HAS_CGAL = _IMP_bff.IMP_CORE_HAS_CGAL
315 IMP_CORE_HAS_HDF5 = _IMP_bff.IMP_CORE_HAS_HDF5
317 IMP_CORE_HAS_NUMPY = _IMP_bff.IMP_CORE_HAS_NUMPY
319 IMPCORE_SHOW_WARNINGS = _IMP_bff.IMPCORE_SHOW_WARNINGS
322 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_bff.IMP_CONTAINER_HAS_IMP_ALGEBRA
324 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_bff.IMP_CONTAINER_HAS_IMP_CGAL
326 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_bff.IMP_CONTAINER_HAS_IMP_DISPLAY
328 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_bff.IMP_CONTAINER_HAS_IMP_KERNEL
330 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_bff.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
332 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_bff.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
334 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
336 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_bff.IMP_CONTAINER_HAS_BOOST_RANDOM
338 IMP_CONTAINER_HAS_CGAL = _IMP_bff.IMP_CONTAINER_HAS_CGAL
340 IMP_CONTAINER_HAS_HDF5 = _IMP_bff.IMP_CONTAINER_HAS_HDF5
342 IMP_CONTAINER_HAS_NUMPY = _IMP_bff.IMP_CONTAINER_HAS_NUMPY
344 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_bff.IMP_CONTAINER_HAS_PYTHON_IHM
346 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_bff.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
348 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_bff.IMP_CONTAINER_HAS_ROBIN_MAP
350 IMPCONTAINER_SHOW_WARNINGS = _IMP_bff.IMPCONTAINER_SHOW_WARNINGS
353 IMP_ATOM_HAS_IMP_CGAL = _IMP_bff.IMP_ATOM_HAS_IMP_CGAL
355 IMP_ATOM_HAS_IMP_KERNEL = _IMP_bff.IMP_ATOM_HAS_IMP_KERNEL
357 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_bff.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
359 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
361 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_bff.IMP_ATOM_HAS_BOOST_RANDOM
363 IMP_ATOM_HAS_BOOST_REGEX = _IMP_bff.IMP_ATOM_HAS_BOOST_REGEX
365 IMP_ATOM_HAS_CGAL = _IMP_bff.IMP_ATOM_HAS_CGAL
367 IMP_ATOM_HAS_HDF5 = _IMP_bff.IMP_ATOM_HAS_HDF5
369 IMP_ATOM_HAS_NUMPY = _IMP_bff.IMP_ATOM_HAS_NUMPY
371 IMP_ATOM_HAS_PYTHON_IHM = _IMP_bff.IMP_ATOM_HAS_PYTHON_IHM
373 IMPATOM_SHOW_WARNINGS = _IMP_bff.IMPATOM_SHOW_WARNINGS
375 IMP_ATOM_TYPE_INDEX = _IMP_bff.IMP_ATOM_TYPE_INDEX
377 IMP_RESIDUE_TYPE_INDEX = _IMP_bff.IMP_RESIDUE_TYPE_INDEX
379 IMP_HIERARCHY_TYPE_INDEX = _IMP_bff.IMP_HIERARCHY_TYPE_INDEX
381 IMP_CHAIN_TYPE_INDEX = _IMP_bff.IMP_CHAIN_TYPE_INDEX
384 IMP_EM_HAS_IMP_CGAL = _IMP_bff.IMP_EM_HAS_IMP_CGAL
386 IMP_EM_HAS_IMP_CONTAINER = _IMP_bff.IMP_EM_HAS_IMP_CONTAINER
388 IMP_EM_HAS_IMP_DISPLAY = _IMP_bff.IMP_EM_HAS_IMP_DISPLAY
390 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_bff.IMP_EM_HAS_IMP_SCORE_FUNCTOR
392 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_bff.IMP_EM_HAS_BOOST_FILESYSTEM
394 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
396 IMP_EM_HAS_BOOST_RANDOM = _IMP_bff.IMP_EM_HAS_BOOST_RANDOM
398 IMP_EM_HAS_BOOST_REGEX = _IMP_bff.IMP_EM_HAS_BOOST_REGEX
400 IMP_EM_HAS_CGAL = _IMP_bff.IMP_EM_HAS_CGAL
402 IMP_EM_HAS_HDF5 = _IMP_bff.IMP_EM_HAS_HDF5
404 IMP_EM_HAS_NUMPY = _IMP_bff.IMP_EM_HAS_NUMPY
406 IMP_EM_HAS_PYTHON_IHM = _IMP_bff.IMP_EM_HAS_PYTHON_IHM
408 IMPEM_SHOW_WARNINGS = _IMP_bff.IMPEM_SHOW_WARNINGS
411 IMP_BFF_HAS_IMP_ALGEBRA = _IMP_bff.IMP_BFF_HAS_IMP_ALGEBRA
413 IMP_BFF_HAS_IMP_CGAL = _IMP_bff.IMP_BFF_HAS_IMP_CGAL
415 IMP_BFF_HAS_IMP_DISPLAY = _IMP_bff.IMP_BFF_HAS_IMP_DISPLAY
417 IMP_BFF_HAS_IMP_KERNEL = _IMP_bff.IMP_BFF_HAS_IMP_KERNEL
419 IMP_BFF_HAS_IMP_SCORE_FUNCTOR = _IMP_bff.IMP_BFF_HAS_IMP_SCORE_FUNCTOR
421 IMP_BFF_HAS_IMP_STATISTICS = _IMP_bff.IMP_BFF_HAS_IMP_STATISTICS
423 IMP_BFF_HAS_BOOST_FILESYSTEM = _IMP_bff.IMP_BFF_HAS_BOOST_FILESYSTEM
425 IMP_BFF_HAS_BOOST_PROGRAMOPTIONS = _IMP_bff.IMP_BFF_HAS_BOOST_PROGRAMOPTIONS
427 IMP_BFF_HAS_BOOST_RANDOM = _IMP_bff.IMP_BFF_HAS_BOOST_RANDOM
429 IMP_BFF_HAS_BOOST_REGEX = _IMP_bff.IMP_BFF_HAS_BOOST_REGEX
431 IMP_BFF_HAS_CGAL = _IMP_bff.IMP_BFF_HAS_CGAL
433 IMP_BFF_HAS_HDF5 = _IMP_bff.IMP_BFF_HAS_HDF5
435 IMP_BFF_HAS_PYTHON_IHM = _IMP_bff.IMP_BFF_HAS_PYTHON_IHM
437 IMP_BFF_HAS_AVX = _IMP_bff.IMP_BFF_HAS_AVX
439 IMPBFF_SHOW_WARNINGS = _IMP_bff.IMPBFF_SHOW_WARNINGS
444 SHARED_PTR_DISOWN = _IMP_bff.SHARED_PTR_DISOWN
446 class PairFloatFloat(object):
447 r"""Proxy of C++ std::pair< float,float > class."""
449 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
450 __repr__ = _swig_repr
452 def __init__(self, *args):
454 __init__(PairFloatFloat self) -> PairFloatFloat
455 __init__(PairFloatFloat self, float first, float second) -> PairFloatFloat
456 __init__(PairFloatFloat self, PairFloatFloat other) -> PairFloatFloat
458 _IMP_bff.PairFloatFloat_swiginit(self, _IMP_bff.new_PairFloatFloat(*args))
459 first = property(_IMP_bff.PairFloatFloat_first_get, _IMP_bff.PairFloatFloat_first_set, doc=
r"""first : float""")
460 second = property(_IMP_bff.PairFloatFloat_second_get, _IMP_bff.PairFloatFloat_second_set, doc=
r"""second : float""")
464 return str((self.first, self.second))
465 def __getitem__(self, index):
470 def __setitem__(self, index, val):
475 __swig_destroy__ = _IMP_bff.delete_PairFloatFloat
478 _IMP_bff.PairFloatFloat_swigregister(PairFloatFloat)
479 class VectorString(object):
480 r"""Proxy of C++ std::vector< std::string > class."""
482 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
483 __repr__ = _swig_repr
486 r"""iterator(VectorString self) -> IMP_BFF_SwigPyIterator"""
487 return _IMP_bff.VectorString_iterator(self)
489 return self.iterator()
492 r"""__bool__(VectorString self) -> bool"""
493 return _IMP_bff.VectorString___bool__(self)
496 r"""__len__(VectorString self) -> std::vector< std::string >::size_type"""
497 return _IMP_bff.VectorString___len__(self)
499 def __delitem__(self, *args):
501 __delitem__(VectorString self, std::vector< std::string >::difference_type i)
502 __delitem__(VectorString self, SWIGPY_SLICEOBJECT * slice)
504 return _IMP_bff.VectorString___delitem__(self, *args)
506 def __getitem__(self, *args):
508 __getitem__(VectorString self, SWIGPY_SLICEOBJECT * slice) -> VectorString
509 __getitem__(VectorString self, std::vector< std::string >::difference_type i) -> std::vector< std::string >::value_type const &
511 return _IMP_bff.VectorString___getitem__(self, *args)
513 def __setitem__(self, *args):
515 __setitem__(VectorString self, SWIGPY_SLICEOBJECT * slice, VectorString v)
516 __setitem__(VectorString self, SWIGPY_SLICEOBJECT * slice)
517 __setitem__(VectorString self, std::vector< std::string >::difference_type i, std::vector< std::string >::value_type const & x)
519 return _IMP_bff.VectorString___setitem__(self, *args)
522 r"""pop(VectorString self) -> std::vector< std::string >::value_type"""
523 return _IMP_bff.VectorString_pop(self)
526 r"""append(VectorString self, std::vector< std::string >::value_type const & x)"""
527 return _IMP_bff.VectorString_append(self, x)
530 r"""empty(VectorString self) -> bool"""
531 return _IMP_bff.VectorString_empty(self)
534 r"""size(VectorString self) -> std::vector< std::string >::size_type"""
535 return _IMP_bff.VectorString_size(self)
538 r"""swap(VectorString self, VectorString v)"""
539 return _IMP_bff.VectorString_swap(self, v)
542 r"""begin(VectorString self) -> std::vector< std::string >::iterator"""
543 return _IMP_bff.VectorString_begin(self)
546 r"""end(VectorString self) -> std::vector< std::string >::iterator"""
547 return _IMP_bff.VectorString_end(self)
550 r"""rbegin(VectorString self) -> std::vector< std::string >::reverse_iterator"""
551 return _IMP_bff.VectorString_rbegin(self)
554 r"""rend(VectorString self) -> std::vector< std::string >::reverse_iterator"""
555 return _IMP_bff.VectorString_rend(self)
558 r"""clear(VectorString self)"""
559 return _IMP_bff.VectorString_clear(self)
561 def get_allocator(self):
562 r"""get_allocator(VectorString self) -> std::vector< std::string >::allocator_type"""
563 return _IMP_bff.VectorString_get_allocator(self)
566 r"""pop_back(VectorString self)"""
567 return _IMP_bff.VectorString_pop_back(self)
569 def erase(self, *args):
571 erase(VectorString self, std::vector< std::string >::iterator pos) -> std::vector< std::string >::iterator
572 erase(VectorString self, std::vector< std::string >::iterator first, std::vector< std::string >::iterator last) -> std::vector< std::string >::iterator
574 return _IMP_bff.VectorString_erase(self, *args)
576 def __init__(self, *args):
578 __init__(VectorString self) -> VectorString
579 __init__(VectorString self, VectorString other) -> VectorString
580 __init__(VectorString self, std::vector< std::string >::size_type size) -> VectorString
581 __init__(VectorString self, std::vector< std::string >::size_type size, std::vector< std::string >::value_type const & value) -> VectorString
583 _IMP_bff.VectorString_swiginit(self, _IMP_bff.new_VectorString(*args))
585 def push_back(self, x):
586 r"""push_back(VectorString self, std::vector< std::string >::value_type const & x)"""
587 return _IMP_bff.VectorString_push_back(self, x)
590 r"""front(VectorString self) -> std::vector< std::string >::value_type const &"""
591 return _IMP_bff.VectorString_front(self)
594 r"""back(VectorString self) -> std::vector< std::string >::value_type const &"""
595 return _IMP_bff.VectorString_back(self)
597 def assign(self, n, x):
598 r"""assign(VectorString self, std::vector< std::string >::size_type n, std::vector< std::string >::value_type const & x)"""
599 return _IMP_bff.VectorString_assign(self, n, x)
601 def resize(self, *args):
603 resize(VectorString self, std::vector< std::string >::size_type new_size)
604 resize(VectorString self, std::vector< std::string >::size_type new_size, std::vector< std::string >::value_type const & x)
606 return _IMP_bff.VectorString_resize(self, *args)
608 def insert(self, *args):
610 insert(VectorString self, std::vector< std::string >::iterator pos, std::vector< std::string >::value_type const & x) -> std::vector< std::string >::iterator
611 insert(VectorString self, std::vector< std::string >::iterator pos, std::vector< std::string >::size_type n, std::vector< std::string >::value_type const & x)
613 return _IMP_bff.VectorString_insert(self, *args)
615 def reserve(self, n):
616 r"""reserve(VectorString self, std::vector< std::string >::size_type n)"""
617 return _IMP_bff.VectorString_reserve(self, n)
620 r"""capacity(VectorString self) -> std::vector< std::string >::size_type"""
621 return _IMP_bff.VectorString_capacity(self)
622 __swig_destroy__ = _IMP_bff.delete_VectorString
625 _IMP_bff.VectorString_swigregister(VectorString)
626 class VectorDouble(object):
627 r"""Proxy of C++ std::vector< double > class."""
629 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
630 __repr__ = _swig_repr
633 r"""iterator(VectorDouble self) -> IMP_BFF_SwigPyIterator"""
634 return _IMP_bff.VectorDouble_iterator(self)
636 return self.iterator()
639 r"""__bool__(VectorDouble self) -> bool"""
640 return _IMP_bff.VectorDouble___bool__(self)
643 r"""__len__(VectorDouble self) -> std::vector< double >::size_type"""
644 return _IMP_bff.VectorDouble___len__(self)
646 def __delitem__(self, *args):
648 __delitem__(VectorDouble self, std::vector< double >::difference_type i)
649 __delitem__(VectorDouble self, SWIGPY_SLICEOBJECT * slice)
651 return _IMP_bff.VectorDouble___delitem__(self, *args)
653 def __getitem__(self, *args):
655 __getitem__(VectorDouble self, SWIGPY_SLICEOBJECT * slice) -> VectorDouble
656 __getitem__(VectorDouble self, std::vector< double >::difference_type i) -> std::vector< double >::value_type const &
658 return _IMP_bff.VectorDouble___getitem__(self, *args)
660 def __setitem__(self, *args):
662 __setitem__(VectorDouble self, SWIGPY_SLICEOBJECT * slice, VectorDouble v)
663 __setitem__(VectorDouble self, SWIGPY_SLICEOBJECT * slice)
664 __setitem__(VectorDouble self, std::vector< double >::difference_type i, std::vector< double >::value_type const & x)
666 return _IMP_bff.VectorDouble___setitem__(self, *args)
669 r"""pop(VectorDouble self) -> std::vector< double >::value_type"""
670 return _IMP_bff.VectorDouble_pop(self)
673 r"""append(VectorDouble self, std::vector< double >::value_type const & x)"""
674 return _IMP_bff.VectorDouble_append(self, x)
677 r"""empty(VectorDouble self) -> bool"""
678 return _IMP_bff.VectorDouble_empty(self)
681 r"""size(VectorDouble self) -> std::vector< double >::size_type"""
682 return _IMP_bff.VectorDouble_size(self)
685 r"""swap(VectorDouble self, VectorDouble v)"""
686 return _IMP_bff.VectorDouble_swap(self, v)
689 r"""begin(VectorDouble self) -> std::vector< double >::iterator"""
690 return _IMP_bff.VectorDouble_begin(self)
693 r"""end(VectorDouble self) -> std::vector< double >::iterator"""
694 return _IMP_bff.VectorDouble_end(self)
697 r"""rbegin(VectorDouble self) -> std::vector< double >::reverse_iterator"""
698 return _IMP_bff.VectorDouble_rbegin(self)
701 r"""rend(VectorDouble self) -> std::vector< double >::reverse_iterator"""
702 return _IMP_bff.VectorDouble_rend(self)
705 r"""clear(VectorDouble self)"""
706 return _IMP_bff.VectorDouble_clear(self)
708 def get_allocator(self):
709 r"""get_allocator(VectorDouble self) -> std::vector< double >::allocator_type"""
710 return _IMP_bff.VectorDouble_get_allocator(self)
713 r"""pop_back(VectorDouble self)"""
714 return _IMP_bff.VectorDouble_pop_back(self)
716 def erase(self, *args):
718 erase(VectorDouble self, std::vector< double >::iterator pos) -> std::vector< double >::iterator
719 erase(VectorDouble self, std::vector< double >::iterator first, std::vector< double >::iterator last) -> std::vector< double >::iterator
721 return _IMP_bff.VectorDouble_erase(self, *args)
723 def __init__(self, *args):
725 __init__(VectorDouble self) -> VectorDouble
726 __init__(VectorDouble self, VectorDouble other) -> VectorDouble
727 __init__(VectorDouble self, std::vector< double >::size_type size) -> VectorDouble
728 __init__(VectorDouble self, std::vector< double >::size_type size, std::vector< double >::value_type const & value) -> VectorDouble
730 _IMP_bff.VectorDouble_swiginit(self, _IMP_bff.new_VectorDouble(*args))
732 def push_back(self, x):
733 r"""push_back(VectorDouble self, std::vector< double >::value_type const & x)"""
734 return _IMP_bff.VectorDouble_push_back(self, x)
737 r"""front(VectorDouble self) -> std::vector< double >::value_type const &"""
738 return _IMP_bff.VectorDouble_front(self)
741 r"""back(VectorDouble self) -> std::vector< double >::value_type const &"""
742 return _IMP_bff.VectorDouble_back(self)
744 def assign(self, n, x):
745 r"""assign(VectorDouble self, std::vector< double >::size_type n, std::vector< double >::value_type const & x)"""
746 return _IMP_bff.VectorDouble_assign(self, n, x)
748 def resize(self, *args):
750 resize(VectorDouble self, std::vector< double >::size_type new_size)
751 resize(VectorDouble self, std::vector< double >::size_type new_size, std::vector< double >::value_type const & x)
753 return _IMP_bff.VectorDouble_resize(self, *args)
755 def insert(self, *args):
757 insert(VectorDouble self, std::vector< double >::iterator pos, std::vector< double >::value_type const & x) -> std::vector< double >::iterator
758 insert(VectorDouble self, std::vector< double >::iterator pos, std::vector< double >::size_type n, std::vector< double >::value_type const & x)
760 return _IMP_bff.VectorDouble_insert(self, *args)
762 def reserve(self, n):
763 r"""reserve(VectorDouble self, std::vector< double >::size_type n)"""
764 return _IMP_bff.VectorDouble_reserve(self, n)
767 r"""capacity(VectorDouble self) -> std::vector< double >::size_type"""
768 return _IMP_bff.VectorDouble_capacity(self)
769 __swig_destroy__ = _IMP_bff.delete_VectorDouble
772 _IMP_bff.VectorDouble_swigregister(VectorDouble)
773 class VectorFloat(object):
774 r"""Proxy of C++ std::vector< float > class."""
776 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
777 __repr__ = _swig_repr
780 r"""iterator(VectorFloat self) -> IMP_BFF_SwigPyIterator"""
781 return _IMP_bff.VectorFloat_iterator(self)
783 return self.iterator()
786 r"""__bool__(VectorFloat self) -> bool"""
787 return _IMP_bff.VectorFloat___bool__(self)
790 r"""__len__(VectorFloat self) -> std::vector< float >::size_type"""
791 return _IMP_bff.VectorFloat___len__(self)
793 def __delitem__(self, *args):
795 __delitem__(VectorFloat self, std::vector< float >::difference_type i)
796 __delitem__(VectorFloat self, SWIGPY_SLICEOBJECT * slice)
798 return _IMP_bff.VectorFloat___delitem__(self, *args)
800 def __getitem__(self, *args):
802 __getitem__(VectorFloat self, SWIGPY_SLICEOBJECT * slice) -> VectorFloat
803 __getitem__(VectorFloat self, std::vector< float >::difference_type i) -> std::vector< float >::value_type const &
805 return _IMP_bff.VectorFloat___getitem__(self, *args)
807 def __setitem__(self, *args):
809 __setitem__(VectorFloat self, SWIGPY_SLICEOBJECT * slice, VectorFloat v)
810 __setitem__(VectorFloat self, SWIGPY_SLICEOBJECT * slice)
811 __setitem__(VectorFloat self, std::vector< float >::difference_type i, std::vector< float >::value_type const & x)
813 return _IMP_bff.VectorFloat___setitem__(self, *args)
816 r"""pop(VectorFloat self) -> std::vector< float >::value_type"""
817 return _IMP_bff.VectorFloat_pop(self)
820 r"""append(VectorFloat self, std::vector< float >::value_type const & x)"""
821 return _IMP_bff.VectorFloat_append(self, x)
824 r"""empty(VectorFloat self) -> bool"""
825 return _IMP_bff.VectorFloat_empty(self)
828 r"""size(VectorFloat self) -> std::vector< float >::size_type"""
829 return _IMP_bff.VectorFloat_size(self)
832 r"""swap(VectorFloat self, VectorFloat v)"""
833 return _IMP_bff.VectorFloat_swap(self, v)
836 r"""begin(VectorFloat self) -> std::vector< float >::iterator"""
837 return _IMP_bff.VectorFloat_begin(self)
840 r"""end(VectorFloat self) -> std::vector< float >::iterator"""
841 return _IMP_bff.VectorFloat_end(self)
844 r"""rbegin(VectorFloat self) -> std::vector< float >::reverse_iterator"""
845 return _IMP_bff.VectorFloat_rbegin(self)
848 r"""rend(VectorFloat self) -> std::vector< float >::reverse_iterator"""
849 return _IMP_bff.VectorFloat_rend(self)
852 r"""clear(VectorFloat self)"""
853 return _IMP_bff.VectorFloat_clear(self)
855 def get_allocator(self):
856 r"""get_allocator(VectorFloat self) -> std::vector< float >::allocator_type"""
857 return _IMP_bff.VectorFloat_get_allocator(self)
860 r"""pop_back(VectorFloat self)"""
861 return _IMP_bff.VectorFloat_pop_back(self)
863 def erase(self, *args):
865 erase(VectorFloat self, std::vector< float >::iterator pos) -> std::vector< float >::iterator
866 erase(VectorFloat self, std::vector< float >::iterator first, std::vector< float >::iterator last) -> std::vector< float >::iterator
868 return _IMP_bff.VectorFloat_erase(self, *args)
870 def __init__(self, *args):
872 __init__(VectorFloat self) -> VectorFloat
873 __init__(VectorFloat self, VectorFloat other) -> VectorFloat
874 __init__(VectorFloat self, std::vector< float >::size_type size) -> VectorFloat
875 __init__(VectorFloat self, std::vector< float >::size_type size, std::vector< float >::value_type const & value) -> VectorFloat
877 _IMP_bff.VectorFloat_swiginit(self, _IMP_bff.new_VectorFloat(*args))
879 def push_back(self, x):
880 r"""push_back(VectorFloat self, std::vector< float >::value_type const & x)"""
881 return _IMP_bff.VectorFloat_push_back(self, x)
884 r"""front(VectorFloat self) -> std::vector< float >::value_type const &"""
885 return _IMP_bff.VectorFloat_front(self)
888 r"""back(VectorFloat self) -> std::vector< float >::value_type const &"""
889 return _IMP_bff.VectorFloat_back(self)
891 def assign(self, n, x):
892 r"""assign(VectorFloat self, std::vector< float >::size_type n, std::vector< float >::value_type const & x)"""
893 return _IMP_bff.VectorFloat_assign(self, n, x)
895 def resize(self, *args):
897 resize(VectorFloat self, std::vector< float >::size_type new_size)
898 resize(VectorFloat self, std::vector< float >::size_type new_size, std::vector< float >::value_type const & x)
900 return _IMP_bff.VectorFloat_resize(self, *args)
902 def insert(self, *args):
904 insert(VectorFloat self, std::vector< float >::iterator pos, std::vector< float >::value_type const & x) -> std::vector< float >::iterator
905 insert(VectorFloat self, std::vector< float >::iterator pos, std::vector< float >::size_type n, std::vector< float >::value_type const & x)
907 return _IMP_bff.VectorFloat_insert(self, *args)
909 def reserve(self, n):
910 r"""reserve(VectorFloat self, std::vector< float >::size_type n)"""
911 return _IMP_bff.VectorFloat_reserve(self, n)
914 r"""capacity(VectorFloat self) -> std::vector< float >::size_type"""
915 return _IMP_bff.VectorFloat_capacity(self)
916 __swig_destroy__ = _IMP_bff.delete_VectorFloat
919 _IMP_bff.VectorFloat_swigregister(VectorFloat)
920 class VectorInt(object):
921 r"""Proxy of C++ std::vector< int > class."""
923 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
924 __repr__ = _swig_repr
927 r"""iterator(VectorInt self) -> IMP_BFF_SwigPyIterator"""
928 return _IMP_bff.VectorInt_iterator(self)
930 return self.iterator()
933 r"""__bool__(VectorInt self) -> bool"""
934 return _IMP_bff.VectorInt___bool__(self)
937 r"""__len__(VectorInt self) -> std::vector< int >::size_type"""
938 return _IMP_bff.VectorInt___len__(self)
940 def __delitem__(self, *args):
942 __delitem__(VectorInt self, std::vector< int >::difference_type i)
943 __delitem__(VectorInt self, SWIGPY_SLICEOBJECT * slice)
945 return _IMP_bff.VectorInt___delitem__(self, *args)
947 def __getitem__(self, *args):
949 __getitem__(VectorInt self, SWIGPY_SLICEOBJECT * slice) -> VectorInt
950 __getitem__(VectorInt self, std::vector< int >::difference_type i) -> std::vector< int >::value_type const &
952 return _IMP_bff.VectorInt___getitem__(self, *args)
954 def __setitem__(self, *args):
956 __setitem__(VectorInt self, SWIGPY_SLICEOBJECT * slice, VectorInt v)
957 __setitem__(VectorInt self, SWIGPY_SLICEOBJECT * slice)
958 __setitem__(VectorInt self, std::vector< int >::difference_type i, std::vector< int >::value_type const & x)
960 return _IMP_bff.VectorInt___setitem__(self, *args)
963 r"""pop(VectorInt self) -> std::vector< int >::value_type"""
964 return _IMP_bff.VectorInt_pop(self)
967 r"""append(VectorInt self, std::vector< int >::value_type const & x)"""
968 return _IMP_bff.VectorInt_append(self, x)
971 r"""empty(VectorInt self) -> bool"""
972 return _IMP_bff.VectorInt_empty(self)
975 r"""size(VectorInt self) -> std::vector< int >::size_type"""
976 return _IMP_bff.VectorInt_size(self)
979 r"""swap(VectorInt self, VectorInt v)"""
980 return _IMP_bff.VectorInt_swap(self, v)
983 r"""begin(VectorInt self) -> std::vector< int >::iterator"""
984 return _IMP_bff.VectorInt_begin(self)
987 r"""end(VectorInt self) -> std::vector< int >::iterator"""
988 return _IMP_bff.VectorInt_end(self)
991 r"""rbegin(VectorInt self) -> std::vector< int >::reverse_iterator"""
992 return _IMP_bff.VectorInt_rbegin(self)
995 r"""rend(VectorInt self) -> std::vector< int >::reverse_iterator"""
996 return _IMP_bff.VectorInt_rend(self)
999 r"""clear(VectorInt self)"""
1000 return _IMP_bff.VectorInt_clear(self)
1002 def get_allocator(self):
1003 r"""get_allocator(VectorInt self) -> std::vector< int >::allocator_type"""
1004 return _IMP_bff.VectorInt_get_allocator(self)
1007 r"""pop_back(VectorInt self)"""
1008 return _IMP_bff.VectorInt_pop_back(self)
1010 def erase(self, *args):
1012 erase(VectorInt self, std::vector< int >::iterator pos) -> std::vector< int >::iterator
1013 erase(VectorInt self, std::vector< int >::iterator first, std::vector< int >::iterator last) -> std::vector< int >::iterator
1015 return _IMP_bff.VectorInt_erase(self, *args)
1017 def __init__(self, *args):
1019 __init__(VectorInt self) -> VectorInt
1020 __init__(VectorInt self, VectorInt other) -> VectorInt
1021 __init__(VectorInt self, std::vector< int >::size_type size) -> VectorInt
1022 __init__(VectorInt self, std::vector< int >::size_type size, std::vector< int >::value_type const & value) -> VectorInt
1024 _IMP_bff.VectorInt_swiginit(self, _IMP_bff.new_VectorInt(*args))
1026 def push_back(self, x):
1027 r"""push_back(VectorInt self, std::vector< int >::value_type const & x)"""
1028 return _IMP_bff.VectorInt_push_back(self, x)
1031 r"""front(VectorInt self) -> std::vector< int >::value_type const &"""
1032 return _IMP_bff.VectorInt_front(self)
1035 r"""back(VectorInt self) -> std::vector< int >::value_type const &"""
1036 return _IMP_bff.VectorInt_back(self)
1038 def assign(self, n, x):
1039 r"""assign(VectorInt self, std::vector< int >::size_type n, std::vector< int >::value_type const & x)"""
1040 return _IMP_bff.VectorInt_assign(self, n, x)
1042 def resize(self, *args):
1044 resize(VectorInt self, std::vector< int >::size_type new_size)
1045 resize(VectorInt self, std::vector< int >::size_type new_size, std::vector< int >::value_type const & x)
1047 return _IMP_bff.VectorInt_resize(self, *args)
1049 def insert(self, *args):
1051 insert(VectorInt self, std::vector< int >::iterator pos, std::vector< int >::value_type const & x) -> std::vector< int >::iterator
1052 insert(VectorInt self, std::vector< int >::iterator pos, std::vector< int >::size_type n, std::vector< int >::value_type const & x)
1054 return _IMP_bff.VectorInt_insert(self, *args)
1056 def reserve(self, n):
1057 r"""reserve(VectorInt self, std::vector< int >::size_type n)"""
1058 return _IMP_bff.VectorInt_reserve(self, n)
1061 r"""capacity(VectorInt self) -> std::vector< int >::size_type"""
1062 return _IMP_bff.VectorInt_capacity(self)
1063 __swig_destroy__ = _IMP_bff.delete_VectorInt
1066 _IMP_bff.VectorInt_swigregister(VectorInt)
1067 class VectorLong(object):
1068 r"""Proxy of C++ std::vector< long > class."""
1070 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1071 __repr__ = _swig_repr
1074 r"""iterator(VectorLong self) -> IMP_BFF_SwigPyIterator"""
1075 return _IMP_bff.VectorLong_iterator(self)
1077 return self.iterator()
1080 r"""__bool__(VectorLong self) -> bool"""
1081 return _IMP_bff.VectorLong___bool__(self)
1084 r"""__len__(VectorLong self) -> std::vector< long >::size_type"""
1085 return _IMP_bff.VectorLong___len__(self)
1087 def __delitem__(self, *args):
1089 __delitem__(VectorLong self, std::vector< long >::difference_type i)
1090 __delitem__(VectorLong self, SWIGPY_SLICEOBJECT * slice)
1092 return _IMP_bff.VectorLong___delitem__(self, *args)
1094 def __getitem__(self, *args):
1096 __getitem__(VectorLong self, SWIGPY_SLICEOBJECT * slice) -> VectorLong
1097 __getitem__(VectorLong self, std::vector< long >::difference_type i) -> std::vector< long >::value_type const &
1099 return _IMP_bff.VectorLong___getitem__(self, *args)
1101 def __setitem__(self, *args):
1103 __setitem__(VectorLong self, SWIGPY_SLICEOBJECT * slice, VectorLong v)
1104 __setitem__(VectorLong self, SWIGPY_SLICEOBJECT * slice)
1105 __setitem__(VectorLong self, std::vector< long >::difference_type i, std::vector< long >::value_type const & x)
1107 return _IMP_bff.VectorLong___setitem__(self, *args)
1110 r"""pop(VectorLong self) -> std::vector< long >::value_type"""
1111 return _IMP_bff.VectorLong_pop(self)
1113 def append(self, x):
1114 r"""append(VectorLong self, std::vector< long >::value_type const & x)"""
1115 return _IMP_bff.VectorLong_append(self, x)
1118 r"""empty(VectorLong self) -> bool"""
1119 return _IMP_bff.VectorLong_empty(self)
1122 r"""size(VectorLong self) -> std::vector< long >::size_type"""
1123 return _IMP_bff.VectorLong_size(self)
1126 r"""swap(VectorLong self, VectorLong v)"""
1127 return _IMP_bff.VectorLong_swap(self, v)
1130 r"""begin(VectorLong self) -> std::vector< long >::iterator"""
1131 return _IMP_bff.VectorLong_begin(self)
1134 r"""end(VectorLong self) -> std::vector< long >::iterator"""
1135 return _IMP_bff.VectorLong_end(self)
1138 r"""rbegin(VectorLong self) -> std::vector< long >::reverse_iterator"""
1139 return _IMP_bff.VectorLong_rbegin(self)
1142 r"""rend(VectorLong self) -> std::vector< long >::reverse_iterator"""
1143 return _IMP_bff.VectorLong_rend(self)
1146 r"""clear(VectorLong self)"""
1147 return _IMP_bff.VectorLong_clear(self)
1149 def get_allocator(self):
1150 r"""get_allocator(VectorLong self) -> std::vector< long >::allocator_type"""
1151 return _IMP_bff.VectorLong_get_allocator(self)
1154 r"""pop_back(VectorLong self)"""
1155 return _IMP_bff.VectorLong_pop_back(self)
1157 def erase(self, *args):
1159 erase(VectorLong self, std::vector< long >::iterator pos) -> std::vector< long >::iterator
1160 erase(VectorLong self, std::vector< long >::iterator first, std::vector< long >::iterator last) -> std::vector< long >::iterator
1162 return _IMP_bff.VectorLong_erase(self, *args)
1164 def __init__(self, *args):
1166 __init__(VectorLong self) -> VectorLong
1167 __init__(VectorLong self, VectorLong other) -> VectorLong
1168 __init__(VectorLong self, std::vector< long >::size_type size) -> VectorLong
1169 __init__(VectorLong self, std::vector< long >::size_type size, std::vector< long >::value_type const & value) -> VectorLong
1171 _IMP_bff.VectorLong_swiginit(self, _IMP_bff.new_VectorLong(*args))
1173 def push_back(self, x):
1174 r"""push_back(VectorLong self, std::vector< long >::value_type const & x)"""
1175 return _IMP_bff.VectorLong_push_back(self, x)
1178 r"""front(VectorLong self) -> std::vector< long >::value_type const &"""
1179 return _IMP_bff.VectorLong_front(self)
1182 r"""back(VectorLong self) -> std::vector< long >::value_type const &"""
1183 return _IMP_bff.VectorLong_back(self)
1185 def assign(self, n, x):
1186 r"""assign(VectorLong self, std::vector< long >::size_type n, std::vector< long >::value_type const & x)"""
1187 return _IMP_bff.VectorLong_assign(self, n, x)
1189 def resize(self, *args):
1191 resize(VectorLong self, std::vector< long >::size_type new_size)
1192 resize(VectorLong self, std::vector< long >::size_type new_size, std::vector< long >::value_type const & x)
1194 return _IMP_bff.VectorLong_resize(self, *args)
1196 def insert(self, *args):
1198 insert(VectorLong self, std::vector< long >::iterator pos, std::vector< long >::value_type const & x) -> std::vector< long >::iterator
1199 insert(VectorLong self, std::vector< long >::iterator pos, std::vector< long >::size_type n, std::vector< long >::value_type const & x)
1201 return _IMP_bff.VectorLong_insert(self, *args)
1203 def reserve(self, n):
1204 r"""reserve(VectorLong self, std::vector< long >::size_type n)"""
1205 return _IMP_bff.VectorLong_reserve(self, n)
1208 r"""capacity(VectorLong self) -> std::vector< long >::size_type"""
1209 return _IMP_bff.VectorLong_capacity(self)
1210 __swig_destroy__ = _IMP_bff.delete_VectorLong
1213 _IMP_bff.VectorLong_swigregister(VectorLong)
1215 PathMapTileEdges=list
1216 _plural_types.append(
"PathMapTileEdges")
1217 _value_types.append(
"PathMapTileEdge")
1220 _object_types.append(
"PathMap")
1223 def _object_cast_to_PathMap(o):
1224 r"""_object_cast_to_PathMap(Object o) -> PathMap"""
1225 return _IMP_bff._object_cast_to_PathMap(o)
1226 class PathMapHeader(object):
1227 r"""Proxy of C++ IMP::bff::PathMapHeader class."""
1229 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1230 __repr__ = _swig_repr
1231 __swig_destroy__ = _IMP_bff.delete_PathMapHeader
1233 def __init__(self, *args, **kwargs):
1234 r"""__init__(PathMapHeader self, double max_path_length=10.0, double grid_spacing=1.0, double neighbor_radius=2, double obstacle_threshold=std::numeric_limits< double >::epsilon()) -> PathMapHeader"""
1235 _IMP_bff.PathMapHeader_swiginit(self, _IMP_bff.new_PathMapHeader(*args, **kwargs))
1237 def update_map_dimensions(self, nx=-1, ny=-1, nz=-1):
1238 r"""update_map_dimensions(PathMapHeader self, int nx=-1, int ny=-1, int nz=-1)"""
1239 return _IMP_bff.PathMapHeader_update_map_dimensions(self, nx, ny, nz)
1241 def set_path_origin(self, v):
1242 r"""set_path_origin(PathMapHeader self, Vector3D v)"""
1243 return _IMP_bff.PathMapHeader_set_path_origin(self, v)
1245 def get_path_origin(self):
1246 r"""get_path_origin(PathMapHeader self) -> Vector3D"""
1247 return _IMP_bff.PathMapHeader_get_path_origin(self)
1249 def get_max_path_length(self):
1250 r"""get_max_path_length(PathMapHeader self) -> double"""
1251 return _IMP_bff.PathMapHeader_get_max_path_length(self)
1253 def get_simulation_grid_resolution(self):
1254 r"""get_simulation_grid_resolution(PathMapHeader self) -> double"""
1255 return _IMP_bff.PathMapHeader_get_simulation_grid_resolution(self)
1257 def set_obstacle_threshold(self, obstacle_threshold):
1258 r"""set_obstacle_threshold(PathMapHeader self, double obstacle_threshold)"""
1259 return _IMP_bff.PathMapHeader_set_obstacle_threshold(self, obstacle_threshold)
1261 def get_obstacle_threshold(self):
1262 r"""get_obstacle_threshold(PathMapHeader self) -> double"""
1263 return _IMP_bff.PathMapHeader_get_obstacle_threshold(self)
1265 def set_neighbor_radius(self, neighbor_radius):
1266 r"""set_neighbor_radius(PathMapHeader self, double neighbor_radius)"""
1267 return _IMP_bff.PathMapHeader_set_neighbor_radius(self, neighbor_radius)
1269 def get_neighbor_radius(self):
1270 r"""get_neighbor_radius(PathMapHeader self) -> double"""
1271 return _IMP_bff.PathMapHeader_get_neighbor_radius(self)
1273 def get_neighbor_box_size(self):
1274 r"""get_neighbor_box_size(PathMapHeader self) -> int"""
1275 return _IMP_bff.PathMapHeader_get_neighbor_box_size(self)
1277 def get_density_header(self):
1278 r"""get_density_header(PathMapHeader self) -> DensityHeader"""
1279 return _IMP_bff.PathMapHeader_get_density_header(self)
1281 def get_density_header_writable(self):
1282 r"""get_density_header_writable(PathMapHeader self) -> DensityHeader"""
1283 return _IMP_bff.PathMapHeader_get_density_header_writable(self)
1285 def get_origin(self):
1286 r"""get_origin(PathMapHeader self) -> Vector3D"""
1287 return _IMP_bff.PathMapHeader_get_origin(self)
1289 def get_grid_edge_length(self):
1290 r"""get_grid_edge_length(PathMapHeader self) -> double"""
1291 return _IMP_bff.PathMapHeader_get_grid_edge_length(self)
1293 def set_origin(self, x, y, z):
1294 r"""set_origin(PathMapHeader self, float x, float y, float z)"""
1295 return _IMP_bff.PathMapHeader_set_origin(self, x, y, z)
1297 def show(self, *args, **kwargs):
1298 r"""show(PathMapHeader self, _ostream out=std::cout)"""
1299 return _IMP_bff.PathMapHeader_show(self, *args, **kwargs)
1302 _IMP_bff.PathMapHeader_swigregister(PathMapHeader)
1304 r"""Proxy of C++ IMP::bff::PathMap class."""
1306 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1308 def update_tiles(self, *args, **kwargs):
1309 r"""update_tiles(PathMap self, float obstacle_threshold=-1.0, bool binarize=True, float obstacle_penalty=TILE_PENALTY_DEFAULT, bool reset_tile_edges=True)"""
1310 return _IMP_bff.PathMap_update_tiles(self, *args, **kwargs)
1312 def resize(self, nvox):
1313 r"""resize(PathMap self, unsigned int nvox)"""
1314 return _IMP_bff.PathMap_resize(self, nvox)
1316 def set_data(self, *args, **kwargs):
1317 r"""set_data(PathMap self, double * input, float obstacle_threshold=-1, bool binarize=True, float obstacle_penalty=TILE_PENALTY_DEFAULT)"""
1318 return _IMP_bff.PathMap_set_data(self, *args, **kwargs)
1320 def get_neighbor_idx_offsets(self, neighbor_radius=-1):
1321 r"""get_neighbor_idx_offsets(PathMap self, double neighbor_radius=-1) -> VectorInt"""
1322 return _IMP_bff.PathMap_get_neighbor_idx_offsets(self, neighbor_radius)
1324 def get_dim_index_by_voxel(self, index, dim):
1325 r"""get_dim_index_by_voxel(PathMap self, long index, int dim) -> int"""
1326 return _IMP_bff.PathMap_get_dim_index_by_voxel(self, index, dim)
1328 def get_path_map_header(self):
1329 h = _IMP_bff.DensityMap_get_path_map_header(self)
1335 def get_path_map_header_writable(self):
1336 h = _IMP_bff.PathMap_get_path_map_header_writable(self)
1342 def set_path_map_header(self, path_map_header, resolution=-1.0):
1343 r"""set_path_map_header(PathMap self, PathMapHeader path_map_header, float resolution=-1.0)"""
1344 return _IMP_bff.PathMap_set_path_map_header(self, path_map_header, resolution)
1346 def get_tile_values(self, *args, **kwargs):
1347 r"""get_tile_values(PathMap self, int value_type=PM_TILE_COST, PairFloatFloat bounds=std::pair< float,float >( {std::numeric_limits<float>::min(), std::numeric_limits<float>::max()}), std::string const & feature_name="")"""
1348 return _IMP_bff.PathMap_get_tile_values(self, *args, **kwargs)
1350 def get_tiles(self):
1351 r"""get_tiles(PathMap self) -> VectorPathMapTile"""
1352 return _IMP_bff.PathMap_get_tiles(self)
1354 def fill_sphere(self, r0, radius, value, inverse=True):
1355 r"""fill_sphere(PathMap self, Vector3D r0, double radius, double value, bool inverse=True)"""
1356 return _IMP_bff.PathMap_fill_sphere(self, r0, radius, value, inverse)
1358 def find_path(self, path_begin_idx, path_end_idx=-1, heuristic_mode=0):
1359 r"""find_path(PathMap self, long path_begin_idx, long path_end_idx=-1, int heuristic_mode=0)"""
1360 return _IMP_bff.PathMap_find_path(self, path_begin_idx, path_end_idx, heuristic_mode)
1362 def find_path_dijkstra(self, path_begin_idx, path_end_idx=-1):
1363 r"""find_path_dijkstra(PathMap self, long path_begin_idx, long path_end_idx=-1)"""
1364 return _IMP_bff.PathMap_find_path_dijkstra(self, path_begin_idx, path_end_idx)
1366 def find_path_astar(self, path_begin_idx, path_end_idx=-1):
1367 r"""find_path_astar(PathMap self, long path_begin_idx, long path_end_idx=-1)"""
1368 return _IMP_bff.PathMap_find_path_astar(self, path_begin_idx, path_end_idx)
1370 def get_xyz_density(self):
1371 r"""get_xyz_density(PathMap self)"""
1372 return _IMP_bff.PathMap_get_xyz_density(self)
1374 def sample_obstacles(self, extra_radius=0.0):
1375 r"""sample_obstacles(PathMap self, double extra_radius=0.0)"""
1376 return _IMP_bff.PathMap_sample_obstacles(self, extra_radius)
1378 def __init__(self, *args, **kwargs):
1379 r"""__init__(PathMap self, PathMapHeader header, std::string name="PathMap%1%", IMP::em::KernelType kt=BINARIZED_SPHERE, float resolution=-1.0) -> PathMap"""
1380 _IMP_bff.PathMap_swiginit(self, _IMP_bff.new_PathMap(*args, **kwargs))
1383 r"""__str__(PathMap self) -> std::string"""
1384 return _IMP_bff.PathMap___str__(self)
1387 r"""__repr__(PathMap self) -> std::string"""
1388 return _IMP_bff.PathMap___repr__(self)
1392 return _object_cast_to_PathMap(o)
1394 __swig_destroy__ = _IMP_bff.delete_PathMap
1397 _IMP_bff.PathMap_swigregister(PathMap)
1400 r"""write_path_map(PathMap m, std::string filename, int value_type, PairFloatFloat bounds=std::pair< float,float >( std::numeric_limits<float>::min(), std::numeric_limits<float>::max() ), std::string const & feature_name="")"""
1401 return _IMP_bff.write_path_map(*args, **kwargs)
1402 PM_TILE_PENALTY = _IMP_bff.PM_TILE_PENALTY
1404 PM_TILE_COST = _IMP_bff.PM_TILE_COST
1406 PM_TILE_DENSITY = _IMP_bff.PM_TILE_DENSITY
1408 PM_TILE_COST_DENSITY = _IMP_bff.PM_TILE_COST_DENSITY
1410 PM_TILE_PATH_LENGTH = _IMP_bff.PM_TILE_PATH_LENGTH
1412 PM_TILE_PATH_LENGTH_DENSITY = _IMP_bff.PM_TILE_PATH_LENGTH_DENSITY
1414 PM_TILE_FEATURE = _IMP_bff.PM_TILE_FEATURE
1416 PM_TILE_ACCESSIBLE_DENSITY = _IMP_bff.PM_TILE_ACCESSIBLE_DENSITY
1418 PM_TILE_ACCESSIBLE_FEATURE = _IMP_bff.PM_TILE_ACCESSIBLE_FEATURE
1420 class PathMapTile(object):
1421 r"""Proxy of C++ IMP::bff::PathMapTile class."""
1423 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1424 __repr__ = _swig_repr
1425 density = property(_IMP_bff.PathMapTile_density_get, _IMP_bff.PathMapTile_density_set, doc=
r"""density : float""")
1427 def __init__(self, index=-1, visit_penalty=0.0, tile_density=1.0):
1428 r"""__init__(PathMapTile self, long index=-1, float visit_penalty=0.0, float tile_density=1.0) -> PathMapTile"""
1429 _IMP_bff.PathMapTile_swiginit(self, _IMP_bff.new_PathMapTile(index, visit_penalty, tile_density))
1431 def backtrack_to_path(self):
1432 r"""backtrack_to_path(PathMapTile self) -> VectorLong"""
1433 return _IMP_bff.PathMapTile_backtrack_to_path(self)
1435 def get_value(self, *args, **kwargs):
1436 r"""get_value(PathMapTile self, int value_type, PairFloatFloat bounds=std::pair< float,float >( {std::numeric_limits<float>::min(), std::numeric_limits<float>::max()}), std::string const & feature_name="", float grid_spacing=1.0) -> float"""
1437 return _IMP_bff.PathMapTile_get_value(self, *args, **kwargs)
1439 def set_value(self, *args, **kwargs):
1440 r"""set_value(PathMapTile self, int value_type, float value, std::string const & name="")"""
1441 return _IMP_bff.PathMapTile_set_value(self, *args, **kwargs)
1442 __swig_destroy__ = _IMP_bff.delete_PathMapTile
1445 _IMP_bff.PathMapTile_swigregister(PathMapTile)
1446 cvar = _IMP_bff.cvar
1447 TILE_VISITED_DEFAULT = cvar.TILE_VISITED_DEFAULT
1448 TILE_PENALTY_DEFAULT = cvar.TILE_PENALTY_DEFAULT
1449 TILE_COST_DEFAULT = cvar.TILE_COST_DEFAULT
1450 TILE_EDGE_COST_DEFAULT = cvar.TILE_EDGE_COST_DEFAULT
1451 TILE_PENALTY_THRESHOLD = cvar.TILE_PENALTY_THRESHOLD
1452 TILE_OBSTACLE_THRESHOLD = cvar.TILE_OBSTACLE_THRESHOLD
1453 TILE_OBSTACLE_PENALTY = cvar.TILE_OBSTACLE_PENALTY
1455 class PathMapTileEdge(IMP._Value):
1456 r"""Proxy of C++ IMP::bff::PathMapTileEdge class."""
1458 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1460 def get_length(self):
1461 r"""get_length(PathMapTileEdge self) -> float"""
1462 return _IMP_bff.PathMapTileEdge_get_length(self)
1464 def __init__(self, *args, **kwargs):
1465 r"""__init__(PathMapTileEdge self, int edge_target=-1, float edge_cost=std::numeric_limits< float >::max()) -> PathMapTileEdge"""
1466 _IMP_bff.PathMapTileEdge_swiginit(self, _IMP_bff.new_PathMapTileEdge(*args, **kwargs))
1468 def show(self, *args, **kwargs):
1469 r"""show(PathMapTileEdge self, _ostream out=std::cout)"""
1470 return _IMP_bff.PathMapTileEdge_show(self, *args, **kwargs)
1473 r"""__str__(PathMapTileEdge self) -> std::string"""
1474 return _IMP_bff.PathMapTileEdge___str__(self)
1477 r"""__repr__(PathMapTileEdge self) -> std::string"""
1478 return _IMP_bff.PathMapTileEdge___repr__(self)
1479 __swig_destroy__ = _IMP_bff.delete_PathMapTileEdge
1482 _IMP_bff.PathMapTileEdge_swigregister(PathMapTileEdge)
1483 class VectorPathMapTile(object):
1484 r"""Proxy of C++ std::vector< IMP::bff::PathMapTile > class."""
1486 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1487 __repr__ = _swig_repr
1490 r"""iterator(VectorPathMapTile self) -> IMP_BFF_SwigPyIterator"""
1491 return _IMP_bff.VectorPathMapTile_iterator(self)
1493 return self.iterator()
1496 r"""__bool__(VectorPathMapTile self) -> bool"""
1497 return _IMP_bff.VectorPathMapTile___bool__(self)
1500 r"""__len__(VectorPathMapTile self) -> std::vector< IMP::bff::PathMapTile >::size_type"""
1501 return _IMP_bff.VectorPathMapTile___len__(self)
1503 def __delitem__(self, *args):
1505 __delitem__(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::difference_type i)
1506 __delitem__(VectorPathMapTile self, SWIGPY_SLICEOBJECT * slice)
1508 return _IMP_bff.VectorPathMapTile___delitem__(self, *args)
1510 def __getitem__(self, *args):
1512 __getitem__(VectorPathMapTile self, SWIGPY_SLICEOBJECT * slice) -> VectorPathMapTile
1513 __getitem__(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::difference_type i) -> PathMapTile
1515 return _IMP_bff.VectorPathMapTile___getitem__(self, *args)
1517 def __setitem__(self, *args):
1519 __setitem__(VectorPathMapTile self, SWIGPY_SLICEOBJECT * slice, VectorPathMapTile v)
1520 __setitem__(VectorPathMapTile self, SWIGPY_SLICEOBJECT * slice)
1521 __setitem__(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::difference_type i, PathMapTile x)
1523 return _IMP_bff.VectorPathMapTile___setitem__(self, *args)
1526 r"""pop(VectorPathMapTile self) -> PathMapTile"""
1527 return _IMP_bff.VectorPathMapTile_pop(self)
1529 def append(self, x):
1530 r"""append(VectorPathMapTile self, PathMapTile x)"""
1531 return _IMP_bff.VectorPathMapTile_append(self, x)
1534 r"""empty(VectorPathMapTile self) -> bool"""
1535 return _IMP_bff.VectorPathMapTile_empty(self)
1538 r"""size(VectorPathMapTile self) -> std::vector< IMP::bff::PathMapTile >::size_type"""
1539 return _IMP_bff.VectorPathMapTile_size(self)
1542 r"""swap(VectorPathMapTile self, VectorPathMapTile v)"""
1543 return _IMP_bff.VectorPathMapTile_swap(self, v)
1546 r"""begin(VectorPathMapTile self) -> std::vector< IMP::bff::PathMapTile >::iterator"""
1547 return _IMP_bff.VectorPathMapTile_begin(self)
1550 r"""end(VectorPathMapTile self) -> std::vector< IMP::bff::PathMapTile >::iterator"""
1551 return _IMP_bff.VectorPathMapTile_end(self)
1554 r"""rbegin(VectorPathMapTile self) -> std::vector< IMP::bff::PathMapTile >::reverse_iterator"""
1555 return _IMP_bff.VectorPathMapTile_rbegin(self)
1558 r"""rend(VectorPathMapTile self) -> std::vector< IMP::bff::PathMapTile >::reverse_iterator"""
1559 return _IMP_bff.VectorPathMapTile_rend(self)
1562 r"""clear(VectorPathMapTile self)"""
1563 return _IMP_bff.VectorPathMapTile_clear(self)
1565 def get_allocator(self):
1566 r"""get_allocator(VectorPathMapTile self) -> std::vector< IMP::bff::PathMapTile >::allocator_type"""
1567 return _IMP_bff.VectorPathMapTile_get_allocator(self)
1570 r"""pop_back(VectorPathMapTile self)"""
1571 return _IMP_bff.VectorPathMapTile_pop_back(self)
1573 def erase(self, *args):
1575 erase(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::iterator pos) -> std::vector< IMP::bff::PathMapTile >::iterator
1576 erase(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::iterator first, std::vector< IMP::bff::PathMapTile >::iterator last) -> std::vector< IMP::bff::PathMapTile >::iterator
1578 return _IMP_bff.VectorPathMapTile_erase(self, *args)
1580 def __init__(self, *args):
1582 __init__(VectorPathMapTile self) -> VectorPathMapTile
1583 __init__(VectorPathMapTile self, VectorPathMapTile other) -> VectorPathMapTile
1584 __init__(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::size_type size) -> VectorPathMapTile
1585 __init__(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::size_type size, PathMapTile value) -> VectorPathMapTile
1587 _IMP_bff.VectorPathMapTile_swiginit(self, _IMP_bff.new_VectorPathMapTile(*args))
1589 def push_back(self, x):
1590 r"""push_back(VectorPathMapTile self, PathMapTile x)"""
1591 return _IMP_bff.VectorPathMapTile_push_back(self, x)
1594 r"""front(VectorPathMapTile self) -> PathMapTile"""
1595 return _IMP_bff.VectorPathMapTile_front(self)
1598 r"""back(VectorPathMapTile self) -> PathMapTile"""
1599 return _IMP_bff.VectorPathMapTile_back(self)
1601 def assign(self, n, x):
1602 r"""assign(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::size_type n, PathMapTile x)"""
1603 return _IMP_bff.VectorPathMapTile_assign(self, n, x)
1605 def resize(self, *args):
1607 resize(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::size_type new_size)
1608 resize(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::size_type new_size, PathMapTile x)
1610 return _IMP_bff.VectorPathMapTile_resize(self, *args)
1612 def insert(self, *args):
1614 insert(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::iterator pos, PathMapTile x) -> std::vector< IMP::bff::PathMapTile >::iterator
1615 insert(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::iterator pos, std::vector< IMP::bff::PathMapTile >::size_type n, PathMapTile x)
1617 return _IMP_bff.VectorPathMapTile_insert(self, *args)
1619 def reserve(self, n):
1620 r"""reserve(VectorPathMapTile self, std::vector< IMP::bff::PathMapTile >::size_type n)"""
1621 return _IMP_bff.VectorPathMapTile_reserve(self, n)
1624 r"""capacity(VectorPathMapTile self) -> std::vector< IMP::bff::PathMapTile >::size_type"""
1625 return _IMP_bff.VectorPathMapTile_capacity(self)
1626 __swig_destroy__ = _IMP_bff.delete_VectorPathMapTile
1629 _IMP_bff.VectorPathMapTile_swigregister(VectorPathMapTile)
1630 class VectorPathMapTileEdge(object):
1631 r"""Proxy of C++ std::vector< IMP::bff::PathMapTileEdge > class."""
1633 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1634 __repr__ = _swig_repr
1637 r"""iterator(VectorPathMapTileEdge self) -> IMP_BFF_SwigPyIterator"""
1638 return _IMP_bff.VectorPathMapTileEdge_iterator(self)
1640 return self.iterator()
1643 r"""__bool__(VectorPathMapTileEdge self) -> bool"""
1644 return _IMP_bff.VectorPathMapTileEdge___bool__(self)
1647 r"""__len__(VectorPathMapTileEdge self) -> std::vector< IMP::bff::PathMapTileEdge >::size_type"""
1648 return _IMP_bff.VectorPathMapTileEdge___len__(self)
1650 def __delitem__(self, *args):
1652 __delitem__(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::difference_type i)
1653 __delitem__(VectorPathMapTileEdge self, SWIGPY_SLICEOBJECT * slice)
1655 return _IMP_bff.VectorPathMapTileEdge___delitem__(self, *args)
1657 def __getitem__(self, *args):
1659 __getitem__(VectorPathMapTileEdge self, SWIGPY_SLICEOBJECT * slice) -> VectorPathMapTileEdge
1660 __getitem__(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::difference_type i) -> PathMapTileEdge
1662 return _IMP_bff.VectorPathMapTileEdge___getitem__(self, *args)
1664 def __setitem__(self, *args):
1666 __setitem__(VectorPathMapTileEdge self, SWIGPY_SLICEOBJECT * slice, VectorPathMapTileEdge v)
1667 __setitem__(VectorPathMapTileEdge self, SWIGPY_SLICEOBJECT * slice)
1668 __setitem__(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::difference_type i, PathMapTileEdge x)
1670 return _IMP_bff.VectorPathMapTileEdge___setitem__(self, *args)
1673 r"""pop(VectorPathMapTileEdge self) -> PathMapTileEdge"""
1674 return _IMP_bff.VectorPathMapTileEdge_pop(self)
1676 def append(self, x):
1677 r"""append(VectorPathMapTileEdge self, PathMapTileEdge x)"""
1678 return _IMP_bff.VectorPathMapTileEdge_append(self, x)
1681 r"""empty(VectorPathMapTileEdge self) -> bool"""
1682 return _IMP_bff.VectorPathMapTileEdge_empty(self)
1685 r"""size(VectorPathMapTileEdge self) -> std::vector< IMP::bff::PathMapTileEdge >::size_type"""
1686 return _IMP_bff.VectorPathMapTileEdge_size(self)
1689 r"""swap(VectorPathMapTileEdge self, VectorPathMapTileEdge v)"""
1690 return _IMP_bff.VectorPathMapTileEdge_swap(self, v)
1693 r"""begin(VectorPathMapTileEdge self) -> std::vector< IMP::bff::PathMapTileEdge >::iterator"""
1694 return _IMP_bff.VectorPathMapTileEdge_begin(self)
1697 r"""end(VectorPathMapTileEdge self) -> std::vector< IMP::bff::PathMapTileEdge >::iterator"""
1698 return _IMP_bff.VectorPathMapTileEdge_end(self)
1701 r"""rbegin(VectorPathMapTileEdge self) -> std::vector< IMP::bff::PathMapTileEdge >::reverse_iterator"""
1702 return _IMP_bff.VectorPathMapTileEdge_rbegin(self)
1705 r"""rend(VectorPathMapTileEdge self) -> std::vector< IMP::bff::PathMapTileEdge >::reverse_iterator"""
1706 return _IMP_bff.VectorPathMapTileEdge_rend(self)
1709 r"""clear(VectorPathMapTileEdge self)"""
1710 return _IMP_bff.VectorPathMapTileEdge_clear(self)
1712 def get_allocator(self):
1713 r"""get_allocator(VectorPathMapTileEdge self) -> std::vector< IMP::bff::PathMapTileEdge >::allocator_type"""
1714 return _IMP_bff.VectorPathMapTileEdge_get_allocator(self)
1717 r"""pop_back(VectorPathMapTileEdge self)"""
1718 return _IMP_bff.VectorPathMapTileEdge_pop_back(self)
1720 def erase(self, *args):
1722 erase(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::iterator pos) -> std::vector< IMP::bff::PathMapTileEdge >::iterator
1723 erase(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::iterator first, std::vector< IMP::bff::PathMapTileEdge >::iterator last) -> std::vector< IMP::bff::PathMapTileEdge >::iterator
1725 return _IMP_bff.VectorPathMapTileEdge_erase(self, *args)
1727 def __init__(self, *args):
1729 __init__(VectorPathMapTileEdge self) -> VectorPathMapTileEdge
1730 __init__(VectorPathMapTileEdge self, VectorPathMapTileEdge other) -> VectorPathMapTileEdge
1731 __init__(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::size_type size) -> VectorPathMapTileEdge
1732 __init__(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::size_type size, PathMapTileEdge value) -> VectorPathMapTileEdge
1734 _IMP_bff.VectorPathMapTileEdge_swiginit(self, _IMP_bff.new_VectorPathMapTileEdge(*args))
1736 def push_back(self, x):
1737 r"""push_back(VectorPathMapTileEdge self, PathMapTileEdge x)"""
1738 return _IMP_bff.VectorPathMapTileEdge_push_back(self, x)
1741 r"""front(VectorPathMapTileEdge self) -> PathMapTileEdge"""
1742 return _IMP_bff.VectorPathMapTileEdge_front(self)
1745 r"""back(VectorPathMapTileEdge self) -> PathMapTileEdge"""
1746 return _IMP_bff.VectorPathMapTileEdge_back(self)
1748 def assign(self, n, x):
1749 r"""assign(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::size_type n, PathMapTileEdge x)"""
1750 return _IMP_bff.VectorPathMapTileEdge_assign(self, n, x)
1752 def resize(self, *args):
1754 resize(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::size_type new_size)
1755 resize(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::size_type new_size, PathMapTileEdge x)
1757 return _IMP_bff.VectorPathMapTileEdge_resize(self, *args)
1759 def insert(self, *args):
1761 insert(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::iterator pos, PathMapTileEdge x) -> std::vector< IMP::bff::PathMapTileEdge >::iterator
1762 insert(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::iterator pos, std::vector< IMP::bff::PathMapTileEdge >::size_type n, PathMapTileEdge x)
1764 return _IMP_bff.VectorPathMapTileEdge_insert(self, *args)
1766 def reserve(self, n):
1767 r"""reserve(VectorPathMapTileEdge self, std::vector< IMP::bff::PathMapTileEdge >::size_type n)"""
1768 return _IMP_bff.VectorPathMapTileEdge_reserve(self, n)
1771 r"""capacity(VectorPathMapTileEdge self) -> std::vector< IMP::bff::PathMapTileEdge >::size_type"""
1772 return _IMP_bff.VectorPathMapTileEdge_capacity(self)
1773 __swig_destroy__ = _IMP_bff.delete_VectorPathMapTileEdge
1776 _IMP_bff.VectorPathMapTileEdge_swigregister(VectorPathMapTileEdge)
1779 return [AV(x)
for x
in l]
1780 _plural_types.append(
"AVs")
1783 _value_types.append(
"AV")
1786 AVPairDistanceMeasurements=list
1787 _plural_types.append(
"AVPairDistanceMeasurements")
1788 _value_types.append(
"AVPairDistanceMeasurement")
1791 _object_types.append(
"AVNetworkRestraint")
1794 def _object_cast_to_AVNetworkRestraint(o):
1795 r"""_object_cast_to_AVNetworkRestraint(Object o) -> AVNetworkRestraint"""
1796 return _IMP_bff._object_cast_to_AVNetworkRestraint(o)
1797 class MapStringAVPairDistanceMeasurement(object):
1798 r"""Proxy of C++ std::map< std::string,IMP::bff::AVPairDistanceMeasurement > class."""
1800 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1801 __repr__ = _swig_repr
1804 r"""iterator(MapStringAVPairDistanceMeasurement self) -> IMP_BFF_SwigPyIterator"""
1805 return _IMP_bff.MapStringAVPairDistanceMeasurement_iterator(self)
1807 return self.iterator()
1810 r"""__bool__(MapStringAVPairDistanceMeasurement self) -> bool"""
1811 return _IMP_bff.MapStringAVPairDistanceMeasurement___bool__(self)
1814 r"""__len__(MapStringAVPairDistanceMeasurement self) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::size_type"""
1815 return _IMP_bff.MapStringAVPairDistanceMeasurement___len__(self)
1817 return self.key_iterator()
1819 return self.key_iterator()
1820 def itervalues(self):
1821 return self.value_iterator()
1822 def iteritems(self):
1823 return self.iterator()
1825 def __getitem__(self, key):
1826 r"""__getitem__(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & key) -> AVPairDistanceMeasurement"""
1827 return _IMP_bff.MapStringAVPairDistanceMeasurement___getitem__(self, key)
1829 def __delitem__(self, key):
1830 r"""__delitem__(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & key)"""
1831 return _IMP_bff.MapStringAVPairDistanceMeasurement___delitem__(self, key)
1833 def has_key(self, key):
1834 r"""has_key(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & key) -> bool"""
1835 return _IMP_bff.MapStringAVPairDistanceMeasurement_has_key(self, key)
1838 r"""keys(MapStringAVPairDistanceMeasurement self) -> PyObject *"""
1839 return _IMP_bff.MapStringAVPairDistanceMeasurement_keys(self)
1842 r"""values(MapStringAVPairDistanceMeasurement self) -> PyObject *"""
1843 return _IMP_bff.MapStringAVPairDistanceMeasurement_values(self)
1846 r"""items(MapStringAVPairDistanceMeasurement self) -> PyObject *"""
1847 return _IMP_bff.MapStringAVPairDistanceMeasurement_items(self)
1849 def __contains__(self, key):
1850 r"""__contains__(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & key) -> bool"""
1851 return _IMP_bff.MapStringAVPairDistanceMeasurement___contains__(self, key)
1853 def key_iterator(self):
1854 r"""key_iterator(MapStringAVPairDistanceMeasurement self) -> IMP_BFF_SwigPyIterator"""
1855 return _IMP_bff.MapStringAVPairDistanceMeasurement_key_iterator(self)
1857 def value_iterator(self):
1858 r"""value_iterator(MapStringAVPairDistanceMeasurement self) -> IMP_BFF_SwigPyIterator"""
1859 return _IMP_bff.MapStringAVPairDistanceMeasurement_value_iterator(self)
1861 def __setitem__(self, *args):
1863 __setitem__(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & key)
1864 __setitem__(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & key, AVPairDistanceMeasurement x)
1866 return _IMP_bff.MapStringAVPairDistanceMeasurement___setitem__(self, *args)
1869 r"""asdict(MapStringAVPairDistanceMeasurement self) -> PyObject *"""
1870 return _IMP_bff.MapStringAVPairDistanceMeasurement_asdict(self)
1872 def __init__(self, *args):
1874 __init__(MapStringAVPairDistanceMeasurement self, std::less< std::string > const & other) -> MapStringAVPairDistanceMeasurement
1875 __init__(MapStringAVPairDistanceMeasurement self) -> MapStringAVPairDistanceMeasurement
1876 __init__(MapStringAVPairDistanceMeasurement self, MapStringAVPairDistanceMeasurement other) -> MapStringAVPairDistanceMeasurement
1878 _IMP_bff.MapStringAVPairDistanceMeasurement_swiginit(self, _IMP_bff.new_MapStringAVPairDistanceMeasurement(*args))
1881 r"""empty(MapStringAVPairDistanceMeasurement self) -> bool"""
1882 return _IMP_bff.MapStringAVPairDistanceMeasurement_empty(self)
1885 r"""size(MapStringAVPairDistanceMeasurement self) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::size_type"""
1886 return _IMP_bff.MapStringAVPairDistanceMeasurement_size(self)
1889 r"""swap(MapStringAVPairDistanceMeasurement self, MapStringAVPairDistanceMeasurement v)"""
1890 return _IMP_bff.MapStringAVPairDistanceMeasurement_swap(self, v)
1893 r"""begin(MapStringAVPairDistanceMeasurement self) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::iterator"""
1894 return _IMP_bff.MapStringAVPairDistanceMeasurement_begin(self)
1897 r"""end(MapStringAVPairDistanceMeasurement self) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::iterator"""
1898 return _IMP_bff.MapStringAVPairDistanceMeasurement_end(self)
1901 r"""rbegin(MapStringAVPairDistanceMeasurement self) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::reverse_iterator"""
1902 return _IMP_bff.MapStringAVPairDistanceMeasurement_rbegin(self)
1905 r"""rend(MapStringAVPairDistanceMeasurement self) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::reverse_iterator"""
1906 return _IMP_bff.MapStringAVPairDistanceMeasurement_rend(self)
1909 r"""clear(MapStringAVPairDistanceMeasurement self)"""
1910 return _IMP_bff.MapStringAVPairDistanceMeasurement_clear(self)
1912 def get_allocator(self):
1913 r"""get_allocator(MapStringAVPairDistanceMeasurement self) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::allocator_type"""
1914 return _IMP_bff.MapStringAVPairDistanceMeasurement_get_allocator(self)
1917 r"""count(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & x) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::size_type"""
1918 return _IMP_bff.MapStringAVPairDistanceMeasurement_count(self, x)
1920 def erase(self, *args):
1922 erase(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & x) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::size_type
1923 erase(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::iterator position)
1924 erase(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::iterator first, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::iterator last)
1926 return _IMP_bff.MapStringAVPairDistanceMeasurement_erase(self, *args)
1929 r"""find(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & x) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::iterator"""
1930 return _IMP_bff.MapStringAVPairDistanceMeasurement_find(self, x)
1932 def lower_bound(self, x):
1933 r"""lower_bound(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & x) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::iterator"""
1934 return _IMP_bff.MapStringAVPairDistanceMeasurement_lower_bound(self, x)
1936 def upper_bound(self, x):
1937 r"""upper_bound(MapStringAVPairDistanceMeasurement self, std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::key_type const & x) -> std::map< std::string,IMP::bff::AVPairDistanceMeasurement >::iterator"""
1938 return _IMP_bff.MapStringAVPairDistanceMeasurement_upper_bound(self, x)
1939 __swig_destroy__ = _IMP_bff.delete_MapStringAVPairDistanceMeasurement
1942 _IMP_bff.MapStringAVPairDistanceMeasurement_swigregister(MapStringAVPairDistanceMeasurement)
1943 DYE_PAIR_DISTANCE_E = _IMP_bff.DYE_PAIR_DISTANCE_E
1945 DYE_PAIR_DISTANCE_MEAN = _IMP_bff.DYE_PAIR_DISTANCE_MEAN
1947 DYE_PAIR_DISTANCE_MP = _IMP_bff.DYE_PAIR_DISTANCE_MP
1949 DYE_PAIR_EFFICIENCY = _IMP_bff.DYE_PAIR_EFFICIENCY
1951 DYE_PAIR_DISTANCE_DISTRIBUTION = _IMP_bff.DYE_PAIR_DISTANCE_DISTRIBUTION
1953 DYE_PAIR_XYZ_DISTANCE = _IMP_bff.DYE_PAIR_XYZ_DISTANCE
1955 class AVPairDistanceMeasurement(IMP._Value):
1956 r"""Proxy of C++ IMP::bff::AVPairDistanceMeasurement class."""
1958 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1959 distance = property(_IMP_bff.AVPairDistanceMeasurement_distance_get, _IMP_bff.AVPairDistanceMeasurement_distance_set, doc=
r"""distance : double""")
1960 error_neg = property(_IMP_bff.AVPairDistanceMeasurement_error_neg_get, _IMP_bff.AVPairDistanceMeasurement_error_neg_set, doc=
r"""error_neg : double""")
1961 error_pos = property(_IMP_bff.AVPairDistanceMeasurement_error_pos_get, _IMP_bff.AVPairDistanceMeasurement_error_pos_set, doc=
r"""error_pos : double""")
1962 forster_radius = property(_IMP_bff.AVPairDistanceMeasurement_forster_radius_get, _IMP_bff.AVPairDistanceMeasurement_forster_radius_set, doc=
r"""forster_radius : double""")
1963 distance_type = property(_IMP_bff.AVPairDistanceMeasurement_distance_type_get, _IMP_bff.AVPairDistanceMeasurement_distance_type_set, doc=
r"""distance_type : int""")
1964 position_1 = property(_IMP_bff.AVPairDistanceMeasurement_position_1_get, _IMP_bff.AVPairDistanceMeasurement_position_1_set, doc=
r"""position_1 : std::string""")
1965 position_2 = property(_IMP_bff.AVPairDistanceMeasurement_position_2_get, _IMP_bff.AVPairDistanceMeasurement_position_2_set, doc=
r"""position_2 : std::string""")
1968 r"""get_json(AVPairDistanceMeasurement self) -> std::string"""
1969 return _IMP_bff.AVPairDistanceMeasurement_get_json(self)
1971 def score_model(self, model):
1972 r"""score_model(AVPairDistanceMeasurement self, double model) -> double"""
1973 return _IMP_bff.AVPairDistanceMeasurement_score_model(self, model)
1975 def show(self, *args, **kwargs):
1976 r"""show(AVPairDistanceMeasurement self, _ostream out=std::cout)"""
1977 return _IMP_bff.AVPairDistanceMeasurement_show(self, *args, **kwargs)
1980 r"""__str__(AVPairDistanceMeasurement self) -> std::string"""
1981 return _IMP_bff.AVPairDistanceMeasurement___str__(self)
1984 r"""__repr__(AVPairDistanceMeasurement self) -> std::string"""
1985 return _IMP_bff.AVPairDistanceMeasurement___repr__(self)
1988 r"""__init__(AVPairDistanceMeasurement self) -> AVPairDistanceMeasurement"""
1989 _IMP_bff.AVPairDistanceMeasurement_swiginit(self, _IMP_bff.new_AVPairDistanceMeasurement())
1990 __swig_destroy__ = _IMP_bff.delete_AVPairDistanceMeasurement
1993 _IMP_bff.AVPairDistanceMeasurement_swigregister(AVPairDistanceMeasurement)
1995 r"""Proxy of C++ IMP::bff::AV class."""
1997 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1999 def create_path_map_header(self):
2000 r"""create_path_map_header(AV self) -> PathMapHeader"""
2001 return _IMP_bff.AV_create_path_map_header(self)
2003 def init_path_map(self):
2004 r"""init_path_map(AV self)"""
2005 return _IMP_bff.AV_init_path_map(self)
2009 r"""get_av_key(unsigned int i) -> FloatKey"""
2010 return _IMP_bff.AV_get_av_key(i)
2013 def do_setup_particle(*args, **kwargs):
2014 r"""do_setup_particle(Model m, ParticleIndex pi, ParticleIndex pi_source, double linker_length=20.0, Vector3D radii=IMP::Vector3D(3.5, 0, 0), double linker_width=0.5, double allowed_sphere_radius=1.5, double contact_volume_thickness=0.0, double contact_volume_trapped_fraction=-1, double simulation_grid_resolution=1.5)"""
2015 return _IMP_bff.AV_do_setup_particle(*args, **kwargs)
2018 def get_particle_key(i):
2019 r"""get_particle_key(unsigned int i) -> ParticleIndexKey"""
2020 return _IMP_bff.AV_get_particle_key(i)
2022 def get_particle_index(self, *args):
2024 get_particle_index(AV self) -> ParticleIndex
2025 get_particle_index(AV self, unsigned int i) -> ParticleIndex
2027 return _IMP_bff.AV_get_particle_index(self, *args)
2029 def get_particle(self, *args):
2031 get_particle(AV self) -> Particle
2032 get_particle(AV self, unsigned int i) -> Particle
2034 return _IMP_bff.AV_get_particle(self, *args)
2036 def __init__(self, *args):
2038 __init__(AV self) -> AV
2039 __init__(AV self, Model m, ParticleIndex id) -> AV
2040 __init__(AV self, _ParticleAdaptor d) -> AV
2042 _IMP_bff.AV_swiginit(self, _IMP_bff.new_AV(*args))
2044 def show(self, *args, **kwargs):
2045 r"""show(AV self, _ostream out=std::cout)"""
2046 return _IMP_bff.AV_show(self, *args, **kwargs)
2049 def setup_particle(*args):
2051 setup_particle(Model m, ParticleIndex pi, ParticleIndex pi_source) -> AV
2052 setup_particle(_ParticleAdaptor pa, ParticleIndex pi_source) -> AV
2054 return _IMP_bff.AV_setup_particle(*args)
2056 def get_linker_length(self):
2057 r"""get_linker_length(AV self) -> IMP::Float"""
2058 return _IMP_bff.AV_get_linker_length(self)
2060 def set_linker_length(self, t):
2061 r"""set_linker_length(AV self, IMP::Float t)"""
2062 return _IMP_bff.AV_set_linker_length(self, t)
2064 def get_radius1(self):
2065 r"""get_radius1(AV self) -> IMP::Float"""
2066 return _IMP_bff.AV_get_radius1(self)
2068 def set_radius1(self, t):
2069 r"""set_radius1(AV self, IMP::Float t)"""
2070 return _IMP_bff.AV_set_radius1(self, t)
2072 def get_radius2(self):
2073 r"""get_radius2(AV self) -> IMP::Float"""
2074 return _IMP_bff.AV_get_radius2(self)
2076 def set_radius2(self, t):
2077 r"""set_radius2(AV self, IMP::Float t)"""
2078 return _IMP_bff.AV_set_radius2(self, t)
2080 def get_radius3(self):
2081 r"""get_radius3(AV self) -> IMP::Float"""
2082 return _IMP_bff.AV_get_radius3(self)
2084 def set_radius3(self, t):
2085 r"""set_radius3(AV self, IMP::Float t)"""
2086 return _IMP_bff.AV_set_radius3(self, t)
2088 def get_linker_width(self):
2089 r"""get_linker_width(AV self) -> IMP::Float"""
2090 return _IMP_bff.AV_get_linker_width(self)
2092 def set_linker_width(self, t):
2093 r"""set_linker_width(AV self, IMP::Float t)"""
2094 return _IMP_bff.AV_set_linker_width(self, t)
2096 def get_allowed_sphere_radius(self):
2097 r"""get_allowed_sphere_radius(AV self) -> IMP::Float"""
2098 return _IMP_bff.AV_get_allowed_sphere_radius(self)
2100 def set_allowed_sphere_radius(self, t):
2101 r"""set_allowed_sphere_radius(AV self, IMP::Float t)"""
2102 return _IMP_bff.AV_set_allowed_sphere_radius(self, t)
2104 def get_contact_volume_thickness(self):
2105 r"""get_contact_volume_thickness(AV self) -> IMP::Float"""
2106 return _IMP_bff.AV_get_contact_volume_thickness(self)
2108 def set_contact_volume_thickness(self, t):
2109 r"""set_contact_volume_thickness(AV self, IMP::Float t)"""
2110 return _IMP_bff.AV_set_contact_volume_thickness(self, t)
2112 def get_contact_volume_trapped_fraction(self):
2113 r"""get_contact_volume_trapped_fraction(AV self) -> IMP::Float"""
2114 return _IMP_bff.AV_get_contact_volume_trapped_fraction(self)
2116 def set_contact_volume_trapped_fraction(self, t):
2117 r"""set_contact_volume_trapped_fraction(AV self, IMP::Float t)"""
2118 return _IMP_bff.AV_set_contact_volume_trapped_fraction(self, t)
2120 def get_simulation_grid_resolution(self):
2121 r"""get_simulation_grid_resolution(AV self) -> IMP::Float"""
2122 return _IMP_bff.AV_get_simulation_grid_resolution(self)
2124 def set_simulation_grid_resolution(self, t):
2125 r"""set_simulation_grid_resolution(AV self, IMP::Float t)"""
2126 return _IMP_bff.AV_set_simulation_grid_resolution(self, t)
2128 def get_radii(self):
2129 r"""get_radii(AV self) -> Vector3D"""
2130 return _IMP_bff.AV_get_radii(self)
2132 def get_parameters_are_optimized(self):
2133 r"""get_parameters_are_optimized(AV self) -> bool"""
2134 return _IMP_bff.AV_get_parameters_are_optimized(self)
2136 def set_av_parameters_are_optimized(self, tf):
2137 r"""set_av_parameters_are_optimized(AV self, bool tf)"""
2138 return _IMP_bff.AV_set_av_parameters_are_optimized(self, tf)
2140 def set_av_parameter(self, j):
2141 r"""set_av_parameter(AV self, nlohmann::json const & j)"""
2142 return _IMP_bff.AV_set_av_parameter(self, j)
2144 def get_derivatives(self):
2145 r"""get_derivatives(AV self) -> Vector3D"""
2146 return _IMP_bff.AV_get_derivatives(self)
2149 def get_is_setup(*args):
2151 get_is_setup(_ParticleAdaptor p) -> bool
2152 get_is_setup(Model m, ParticleIndex pi) -> bool
2154 return _IMP_bff.AV_get_is_setup(*args)
2157 r"""get_map(AV self) -> PathMap"""
2158 return _IMP_bff.AV_get_map(self)
2160 def resample(self, shift_xyz=True):
2161 r"""resample(AV self, bool shift_xyz=True)"""
2162 return _IMP_bff.AV_resample(self, shift_xyz)
2164 def get_mean_position(self, include_source=True):
2165 r"""get_mean_position(AV self, bool include_source=True) -> Vector3D"""
2166 return _IMP_bff.AV_get_mean_position(self, include_source)
2168 def get_source_coordinates(self):
2169 r"""get_source_coordinates(AV self) -> Vector3D"""
2170 return _IMP_bff.AV_get_source_coordinates(self)
2172 def get_source(self):
2173 r"""get_source(AV self) -> Particle"""
2174 return _IMP_bff.AV_get_source(self)
2176 def add_attribute(self, *args):
2178 add_attribute(AV self, FloatKey k, IMP::Float v, bool opt)
2179 add_attribute(AV self, FloatKey a0, IMP::Float a1)
2180 add_attribute(AV self, IntKey a0, IMP::Int a1)
2181 add_attribute(AV self, FloatsKey a0, IMP::Floats a1)
2182 add_attribute(AV self, IntsKey a0, IMP::Ints a1)
2183 add_attribute(AV self, StringKey a0, IMP::String a1)
2184 add_attribute(AV self, ParticleIndexKey a0, Particle a1)
2185 add_attribute(AV self, ObjectKey a0, Object a1)
2186 add_attribute(AV self, SparseFloatKey a0, IMP::Float a1)
2187 add_attribute(AV self, SparseIntKey a0, IMP::Int a1)
2188 add_attribute(AV self, SparseStringKey a0, IMP::String a1)
2189 add_attribute(AV self, SparseParticleIndexKey a0, ParticleIndex a1)
2191 return _IMP_bff.AV_add_attribute(self, *args)
2193 def get_value(self, *args):
2195 get_value(AV self, FloatKey a0) -> IMP::Float
2196 get_value(AV self, IntKey a0) -> IMP::Int
2197 get_value(AV self, FloatsKey a0) -> IMP::Floats
2198 get_value(AV self, IntsKey a0) -> IMP::Ints
2199 get_value(AV self, StringKey a0) -> IMP::String
2200 get_value(AV self, ParticleIndexKey a0) -> Particle
2201 get_value(AV self, ObjectKey a0) -> Object
2202 get_value(AV self, SparseFloatKey a0) -> IMP::Float
2203 get_value(AV self, SparseIntKey a0) -> IMP::Int
2204 get_value(AV self, SparseStringKey a0) -> IMP::String
2205 get_value(AV self, SparseParticleIndexKey a0) -> ParticleIndex
2207 return _IMP_bff.AV_get_value(self, *args)
2209 def set_value(self, *args):
2211 set_value(AV self, FloatKey a0, IMP::Float a1)
2212 set_value(AV self, IntKey a0, IMP::Int a1)
2213 set_value(AV self, FloatsKey a0, IMP::Floats a1)
2214 set_value(AV self, IntsKey a0, IMP::Ints a1)
2215 set_value(AV self, StringKey a0, IMP::String a1)
2216 set_value(AV self, ParticleIndexKey a0, Particle a1)
2217 set_value(AV self, ObjectKey a0, Object a1)
2218 set_value(AV self, SparseFloatKey a0, IMP::Float a1)
2219 set_value(AV self, SparseIntKey a0, IMP::Int a1)
2220 set_value(AV self, SparseStringKey a0, IMP::String a1)
2221 set_value(AV self, SparseParticleIndexKey a0, ParticleIndex a1)
2223 return _IMP_bff.AV_set_value(self, *args)
2225 def remove_attribute(self, *args):
2227 remove_attribute(AV self, FloatKey a0)
2228 remove_attribute(AV self, IntKey a0)
2229 remove_attribute(AV self, FloatsKey a0)
2230 remove_attribute(AV self, IntsKey a0)
2231 remove_attribute(AV self, StringKey a0)
2232 remove_attribute(AV self, ParticleIndexKey a0)
2233 remove_attribute(AV self, ObjectKey a0)
2234 remove_attribute(AV self, SparseFloatKey a0)
2235 remove_attribute(AV self, SparseIntKey a0)
2236 remove_attribute(AV self, SparseStringKey a0)
2237 remove_attribute(AV self, SparseParticleIndexKey a0)
2239 return _IMP_bff.AV_remove_attribute(self, *args)
2241 def has_attribute(self, *args):
2243 has_attribute(AV self, FloatKey a0) -> bool
2244 has_attribute(AV self, IntKey a0) -> bool
2245 has_attribute(AV self, FloatsKey a0) -> bool
2246 has_attribute(AV self, IntsKey a0) -> bool
2247 has_attribute(AV self, StringKey a0) -> bool
2248 has_attribute(AV self, ParticleIndexKey a0) -> bool
2249 has_attribute(AV self, ObjectKey a0) -> bool
2250 has_attribute(AV self, SparseFloatKey a0) -> bool
2251 has_attribute(AV self, SparseIntKey a0) -> bool
2252 has_attribute(AV self, SparseStringKey a0) -> bool
2253 has_attribute(AV self, SparseParticleIndexKey a0) -> bool
2255 return _IMP_bff.AV_has_attribute(self, *args)
2257 def get_derivative(self, a0):
2258 r"""get_derivative(AV self, FloatKey a0) -> double"""
2259 return _IMP_bff.AV_get_derivative(self, a0)
2262 r"""get_name(AV self) -> std::string"""
2263 return _IMP_bff.AV_get_name(self)
2265 def clear_caches(self):
2266 r"""clear_caches(AV self)"""
2267 return _IMP_bff.AV_clear_caches(self)
2269 def set_name(self, a0):
2270 r"""set_name(AV self, std::string a0)"""
2271 return _IMP_bff.AV_set_name(self, a0)
2274 r"""set_check_level(AV self, IMP::CheckLevel a0)"""
2275 return _IMP_bff.AV_set_check_level(self, a0)
2277 def add_to_derivative(self, a0, a1, a2):
2278 r"""add_to_derivative(AV self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
2279 return _IMP_bff.AV_add_to_derivative(self, a0, a1, a2)
2281 def set_is_optimized(self, a0, a1):
2282 r"""set_is_optimized(AV self, FloatKey a0, bool a1)"""
2283 return _IMP_bff.AV_set_is_optimized(self, a0, a1)
2285 def get_is_optimized(self, a0):
2286 r"""get_is_optimized(AV self, FloatKey a0) -> bool"""
2287 return _IMP_bff.AV_get_is_optimized(self, a0)
2290 r"""get_check_level(AV self) -> IMP::CheckLevel"""
2291 return _IMP_bff.AV_get_check_level(self)
2293 def __eq__(self, *args):
2295 __eq__(AV self, AV o) -> bool
2296 __eq__(AV self, Particle d) -> bool
2298 return _IMP_bff.AV___eq__(self, *args)
2300 def __ne__(self, *args):
2302 __ne__(AV self, AV o) -> bool
2303 __ne__(AV self, Particle d) -> bool
2305 return _IMP_bff.AV___ne__(self, *args)
2307 def __le__(self, *args):
2309 __le__(AV self, AV o) -> bool
2310 __le__(AV self, Particle d) -> bool
2312 return _IMP_bff.AV___le__(self, *args)
2314 def __lt__(self, *args):
2316 __lt__(AV self, AV o) -> bool
2317 __lt__(AV self, Particle d) -> bool
2319 return _IMP_bff.AV___lt__(self, *args)
2321 def __ge__(self, *args):
2323 __ge__(AV self, AV o) -> bool
2324 __ge__(AV self, Particle d) -> bool
2326 return _IMP_bff.AV___ge__(self, *args)
2328 def __gt__(self, *args):
2330 __gt__(AV self, AV o) -> bool
2331 __gt__(AV self, Particle d) -> bool
2333 return _IMP_bff.AV___gt__(self, *args)
2336 r"""__hash__(AV self) -> std::size_t"""
2337 return _IMP_bff.AV___hash__(self)
2340 r"""__str__(AV self) -> std::string"""
2341 return _IMP_bff.AV___str__(self)
2344 r"""__repr__(AV self) -> std::string"""
2345 return _IMP_bff.AV___repr__(self)
2347 def _get_as_binary(self):
2348 r"""_get_as_binary(AV self) -> PyObject *"""
2349 return _IMP_bff.AV__get_as_binary(self)
2351 def _set_from_binary(self, p):
2352 r"""_set_from_binary(AV self, PyObject * p)"""
2353 return _IMP_bff.AV__set_from_binary(self, p)
2355 def __getstate__(self):
2356 p = self._get_as_binary()
2357 if len(self.__dict__) > 1:
2358 d = self.__dict__.copy()
2363 def __setstate__(self, p):
2364 if not hasattr(self,
'this'):
2366 if isinstance(p, tuple):
2368 self.__dict__.update(d)
2369 return self._set_from_binary(p)
2372 map = property(get_map)
2374 __swig_destroy__ = _IMP_bff.delete_AV
2377 _IMP_bff.AV_swigregister(AV)
2379 def __lshift__(out, n):
2380 r"""__lshift__(_ostream out, AV n) -> _ostream"""
2381 return _IMP_bff.__lshift__(out, n)
2384 r"""av_distance(AV a, AV b, double forster_radius=52.0, int distance_type=DYE_PAIR_DISTANCE_MEAN, int n_samples=10000) -> double"""
2385 return _IMP_bff.av_distance(*args, **kwargs)
2387 def av_random_points(av1, n_samples=10000):
2388 r"""av_random_points(AV av1, int n_samples=10000) -> VectorDouble"""
2389 return _IMP_bff.av_random_points(av1, n_samples)
2392 r"""av_random_distances(AV av1, AV av2, int n_samples=10000) -> VectorDouble"""
2393 return _IMP_bff.av_random_distances(av1, av2, n_samples)
2396 r"""av_distance_distribution(AV av1, AV av2, VectorDouble axis, int n_samples=10000) -> VectorDouble"""
2397 return _IMP_bff.av_distance_distribution(av1, av2, axis, n_samples)
2400 r"""search_labeling_site(Hierarchy hier, std::string json_str="", nlohmann::json const & json_data=nlohmann::json()) -> ParticleIndex"""
2401 return _IMP_bff.search_labeling_site(*args, **kwargs)
2403 r"""Proxy of C++ IMP::bff::AVNetworkRestraint class."""
2405 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2407 def __init__(self, *args, **kwargs):
2408 r"""__init__(AVNetworkRestraint self, Hierarchy hier, std::string fps_json_fn, std::string name="AVNetworkRestraint%1%", std::string score_set="", int n_samples=50000) -> AVNetworkRestraint"""
2409 _IMP_bff.AVNetworkRestraint_swiginit(self, _IMP_bff.new_AVNetworkRestraint(*args, **kwargs))
2411 def get_probability(self):
2412 r"""get_probability(AVNetworkRestraint self) -> double"""
2413 return _IMP_bff.AVNetworkRestraint_get_probability(self)
2415 def get_used_avs(self):
2416 r"""get_used_avs(AVNetworkRestraint self) -> IMP::bff::AVs const"""
2417 return _IMP_bff.AVNetworkRestraint_get_used_avs(self)
2419 def get_used_distances(self):
2420 r"""get_used_distances(AVNetworkRestraint self) -> MapStringAVPairDistanceMeasurement"""
2421 return _IMP_bff.AVNetworkRestraint_get_used_distances(self)
2423 def get_model_distance(self, position1_name, position2_name, forster_radius, distance_type):
2424 r"""get_model_distance(AVNetworkRestraint self, std::string position1_name, std::string position2_name, double forster_radius, int distance_type) -> double"""
2425 return _IMP_bff.AVNetworkRestraint_get_model_distance(self, position1_name, position2_name, forster_radius, distance_type)
2428 r"""get_indexes(AVNetworkRestraint self) -> IMP::ParticleIndexes const"""
2429 return _IMP_bff.AVNetworkRestraint_get_indexes(self)
2431 def do_get_inputs(self):
2432 r"""do_get_inputs(AVNetworkRestraint self) -> IMP::ModelObjectsTemp"""
2433 return _IMP_bff.AVNetworkRestraint_do_get_inputs(self)
2435 def show(self, out):
2436 r"""show(AVNetworkRestraint self, _ostream out)"""
2437 return _IMP_bff.AVNetworkRestraint_show(self, out)
2439 def get_version_info(self):
2440 r"""get_version_info(AVNetworkRestraint self) -> VersionInfo"""
2441 return _IMP_bff.AVNetworkRestraint_get_version_info(self)
2442 __swig_destroy__ = _IMP_bff.delete_AVNetworkRestraint
2445 r"""__str__(AVNetworkRestraint self) -> std::string"""
2446 return _IMP_bff.AVNetworkRestraint___str__(self)
2449 r"""__repr__(AVNetworkRestraint self) -> std::string"""
2450 return _IMP_bff.AVNetworkRestraint___repr__(self)
2454 return _object_cast_to_AVNetworkRestraint(o)
2458 _IMP_bff.AVNetworkRestraint_swigregister(AVNetworkRestraint)
2461 r"""decay_rescale(double * fit, double * decay, int start=0, int stop=-1) -> double"""
2462 return _IMP_bff.decay_rescale(fit, decay, start, stop)
2465 r"""decay_rescale_w(double * fit, double * decay, double * w_sq, int start=0, int stop=-1) -> double"""
2466 return _IMP_bff.decay_rescale_w(fit, decay, w_sq, start, stop)
2469 r"""decay_rescale_w_bg(double * fit, double * decay, double * w_sq, double bg=0.0, int start=0, int stop=-1) -> double"""
2470 return _IMP_bff.decay_rescale_w_bg(fit, decay, w_sq, bg, start, stop)
2472 def decay_fconv(fit, irf, x, start=0, stop=-1, dt=1.0):
2473 r"""decay_fconv(double * fit, double * irf, double * x, int start=0, int stop=-1, double dt=1.0)"""
2474 return _IMP_bff.decay_fconv(fit, irf, x, start, stop, dt)
2477 r"""decay_fconv_avx(double * fit, double * irf, double * x, int start=0, int stop=-1, double dt=1.0)"""
2478 return _IMP_bff.decay_fconv_avx(fit, irf, x, start, stop, dt)
2481 r"""decay_fconv_per(double * fit, double * irf, double * x, double period, int start=0, int stop=-1, double dt=1.0)"""
2482 return _IMP_bff.decay_fconv_per(fit, irf, x, period, start, stop, dt)
2485 r"""decay_fconv_per_avx(double * fit, double * irf, double * x, double period, int start=0, int stop=-1, double dt=1.0)"""
2486 return _IMP_bff.decay_fconv_per_avx(fit, irf, x, period, start, stop, dt)
2489 r"""decay_fconv_per_cs(double * fit, double * irf, double * x, double period, int conv_stop=-1, int stop=-1, double dt=1.0)"""
2490 return _IMP_bff.decay_fconv_per_cs(fit, irf, x, period, conv_stop, stop, dt)
2493 r"""decay_fconv_ref(double * fit, double * irf, double * x, double tauref, int start=0, int stop=-1, double dt=1.0)"""
2494 return _IMP_bff.decay_fconv_ref(fit, irf, x, tauref, start, stop, dt)
2496 def decay_sconv(fit, irf, model, start=0, stop=-1):
2497 r"""decay_sconv(double * fit, double * irf, double * model, int start=0, int stop=-1)"""
2498 return _IMP_bff.decay_sconv(fit, irf, model, start, stop)
2501 r"""decay_shift_lamp(double * irf, double * irf_shift, double ts)"""
2502 return _IMP_bff.decay_shift_lamp(irf, irf_shift, ts)
2505 r"""mod_p(int a, int n) -> int"""
2506 return _IMP_bff.mod_p(a, n)
2509 r"""decay_add_pile_up_to_model(double * model, double * data, double repetition_rate, double instrument_dead_time, double measurement_time, std::string pile_up_model="coates", int start=0, int stop=-1)"""
2510 return _IMP_bff.decay_add_pile_up_to_model(*args, **kwargs)
2513 r"""discriminate_small_amplitudes(double * lifetime_spectrum, double amplitude_threshold)"""
2514 return _IMP_bff.discriminate_small_amplitudes(lifetime_spectrum, amplitude_threshold)
2517 r"""decay_fconv_per_cs_time_axis(double * model, double * time_axis, double * irf, double * lifetime_spectrum, int convolution_start=0, int convolution_stop=-1, double period=100.0)"""
2518 return _IMP_bff.decay_fconv_per_cs_time_axis(model, time_axis, irf, lifetime_spectrum, convolution_start, convolution_stop, period)
2520 def decay_fconv_cs_time_axis(inplace_output, time_axis, irf, lifetime_spectrum, convolution_start=0, convolution_stop=-1):
2521 r"""decay_fconv_cs_time_axis(double * inplace_output, double * time_axis, double * irf, double * lifetime_spectrum, int convolution_start=0, int convolution_stop=-1)"""
2522 return _IMP_bff.decay_fconv_cs_time_axis(inplace_output, time_axis, irf, lifetime_spectrum, convolution_start, convolution_stop)
2523 NOISE_NA = _IMP_bff.NOISE_NA
2525 NOISE_POISSON = _IMP_bff.NOISE_POISSON
2527 class DecayCurve(object):
2528 r"""Proxy of C++ IMP::bff::DecayCurve class."""
2530 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2531 __repr__ = _swig_repr
2534 def shift_array(input, shift):
2535 r"""shift_array(double * input, double shift) -> VectorDouble"""
2536 return _IMP_bff.DecayCurve_shift_array(input, shift)
2539 r"""size(DecayCurve self) -> size_t"""
2540 return _IMP_bff.DecayCurve_size(self)
2543 r"""empty(DecayCurve self) -> bool"""
2544 return _IMP_bff.DecayCurve_empty(self)
2547 r"""get_dx(DecayCurve self) -> VectorDouble"""
2548 return _IMP_bff.DecayCurve_get_dx(self)
2550 def resize(self, n, v=0.0, dx=1.0):
2551 r"""resize(DecayCurve self, size_t n, double v=0.0, double dx=1.0)"""
2552 return _IMP_bff.DecayCurve_resize(self, n, v, dx)
2554 def get_average_dx(self):
2555 r"""get_average_dx(DecayCurve self) -> double"""
2556 return _IMP_bff.DecayCurve_get_average_dx(self)
2559 r"""get_x(DecayCurve self) -> VectorDouble"""
2560 return _IMP_bff.DecayCurve_get_x(self)
2562 def set_x(self, *args):
2564 set_x(DecayCurve self, VectorDouble v)
2565 set_x(DecayCurve self, double * input)
2567 return _IMP_bff.DecayCurve_set_x(self, *args)
2570 r"""get_y(DecayCurve self) -> VectorDouble"""
2571 return _IMP_bff.DecayCurve_get_y(self)
2573 def set_y(self, *args):
2575 set_y(DecayCurve self, VectorDouble v)
2576 set_y(DecayCurve self, double * input)
2578 return _IMP_bff.DecayCurve_set_y(self, *args)
2581 r"""get_ey(DecayCurve self) -> VectorDouble"""
2582 return _IMP_bff.DecayCurve_get_ey(self)
2584 def set_ey(self, *args):
2586 set_ey(DecayCurve self, VectorDouble v)
2587 set_ey(DecayCurve self, double * input)
2589 return _IMP_bff.DecayCurve_set_ey(self, *args)
2591 def set_acquisition_time(self, v):
2592 r"""set_acquisition_time(DecayCurve self, double v)"""
2593 return _IMP_bff.DecayCurve_set_acquisition_time(self, v)
2595 def get_acquisition_time(self):
2596 r"""get_acquisition_time(DecayCurve self) -> double"""
2597 return _IMP_bff.DecayCurve_get_acquisition_time(self)
2599 def set_shift(self, v):
2600 r"""set_shift(DecayCurve self, double v)"""
2601 return _IMP_bff.DecayCurve_set_shift(self, v)
2603 def get_shift(self):
2604 r"""get_shift(DecayCurve self) -> double"""
2605 return _IMP_bff.DecayCurve_get_shift(self)
2608 r"""get_json(DecayCurve self) -> std::string"""
2609 return _IMP_bff.DecayCurve_get_json(self)
2611 def read_json(self, json_string):
2612 r"""read_json(DecayCurve self, std::string json_string) -> int"""
2613 return _IMP_bff.DecayCurve_read_json(self, json_string)
2615 def __init__(self, *args, **kwargs):
2616 r"""__init__(DecayCurve self, VectorDouble x=std::vector< double >(), VectorDouble y=std::vector< double >(), VectorDouble ey=std::vector< double >(), double acquisition_time=std::numeric_limits< double >::max(), int noise_model=NOISE_POISSON, int size=-1) -> DecayCurve"""
2617 _IMP_bff.DecayCurve_swiginit(self, _IMP_bff.new_DecayCurve(*args, **kwargs))
2619 def sum(self, start=0, stop=-1):
2620 r"""sum(DecayCurve self, int start=0, int stop=-1) -> double"""
2621 return _IMP_bff.DecayCurve_sum(self, start, stop)
2623 def apply_simple_moving_average(self, start, stop, n_window=5, normalize=False):
2624 r"""apply_simple_moving_average(DecayCurve self, int start, int stop, int n_window=5, bool normalize=False)"""
2625 return _IMP_bff.DecayCurve_apply_simple_moving_average(self, start, stop, n_window, normalize)
2627 def __iadd__(self, v):
2628 r"""__iadd__(DecayCurve self, double v) -> DecayCurve"""
2629 return _IMP_bff.DecayCurve___iadd__(self, v)
2631 def __isub__(self, v):
2632 r"""__isub__(DecayCurve self, double v) -> DecayCurve"""
2633 return _IMP_bff.DecayCurve___isub__(self, v)
2635 def __imul__(self, v):
2636 r"""__imul__(DecayCurve self, double v) -> DecayCurve"""
2637 return _IMP_bff.DecayCurve___imul__(self, v)
2639 def __itruediv__(self, *args):
2640 return _IMP_bff.DecayCurve___itruediv__(self, *args)
2641 __idiv__ = __itruediv__
2645 def __add__(self, *args):
2647 __add__(DecayCurve self, double v) -> DecayCurve
2648 __add__(DecayCurve self, DecayCurve other) -> DecayCurve
2650 return _IMP_bff.DecayCurve___add__(self, *args)
2652 def __sub__(self, *args):
2654 __sub__(DecayCurve self, double v) -> DecayCurve
2655 __sub__(DecayCurve self, DecayCurve other) -> DecayCurve
2657 return _IMP_bff.DecayCurve___sub__(self, *args)
2659 def __mul__(self, *args):
2661 __mul__(DecayCurve self, double v) -> DecayCurve
2662 __mul__(DecayCurve self, DecayCurve other) -> DecayCurve
2664 return _IMP_bff.DecayCurve___mul__(self, *args)
2666 def __truediv__(self, *args):
2667 return _IMP_bff.DecayCurve___truediv__(self, *args)
2671 def __lshift__(self, v):
2672 r"""__lshift__(DecayCurve self, double v) -> DecayCurve"""
2673 return _IMP_bff.DecayCurve___lshift__(self, v)
2675 acquisition_time = property(get_acquisition_time, set_acquisition_time)
2678 shift = property(get_shift, set_shift)
2682 lambda x: np.array(x.get_x()),
2688 lambda x: np.array(x.get_y()),
2694 lambda x: np.array(x.get_ey()),
2698 __swig_destroy__ = _IMP_bff.delete_DecayCurve
2701 _IMP_bff.DecayCurve_swigregister(DecayCurve)
2704 _plural_types.append(
"DecayRanges")
2705 _value_types.append(
"DecayRange")
2707 class DecayRange(IMP._Value):
2708 r"""Proxy of C++ IMP::bff::DecayRange class."""
2710 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2712 def get_start(self, d=None):
2713 r"""get_start(DecayRange self, DecayCurve d=None) -> size_t"""
2714 return _IMP_bff.DecayRange_get_start(self, d)
2716 def get_stop(self, d=None):
2717 r"""get_stop(DecayRange self, DecayCurve d=None) -> size_t"""
2718 return _IMP_bff.DecayRange_get_stop(self, d)
2720 def set_range(self, v):
2721 r"""set_range(DecayRange self, VectorInt v)"""
2722 return _IMP_bff.DecayRange_set_range(self, v)
2724 def get_range(self, d=None):
2725 r"""get_range(DecayRange self, DecayCurve d=None) -> VectorInt"""
2726 return _IMP_bff.DecayRange_get_range(self, d)
2728 def set(self, start=0, stop=-1):
2729 r"""set(DecayRange self, int start=0, int stop=-1)"""
2730 return _IMP_bff.DecayRange_set(self, start, stop)
2732 def __init__(self, start, stop):
2733 r"""__init__(DecayRange self, int start, int stop) -> DecayRange"""
2734 _IMP_bff.DecayRange_swiginit(self, _IMP_bff.new_DecayRange(start, stop))
2735 __swig_destroy__ = _IMP_bff.delete_DecayRange
2737 def show(self, *args, **kwargs):
2738 r"""show(DecayRange self, _ostream out=std::cout)"""
2739 return _IMP_bff.DecayRange_show(self, *args, **kwargs)
2742 r"""__str__(DecayRange self) -> std::string"""
2743 return _IMP_bff.DecayRange___str__(self)
2746 r"""__repr__(DecayRange self) -> std::string"""
2747 return _IMP_bff.DecayRange___repr__(self)
2748 start = property(_IMP_bff.DecayRange_start_get, _IMP_bff.DecayRange_start_set, doc=
r"""start : int""")
2749 stop = property(_IMP_bff.DecayRange_stop_get, _IMP_bff.DecayRange_stop_set, doc=
r"""stop : int""")
2752 _IMP_bff.DecayRange_swigregister(DecayRange)
2754 _object_types.append(
"DecayLifetimeHandler")
2757 def _object_cast_to_DecayLifetimeHandler(o):
2758 r"""_object_cast_to_DecayLifetimeHandler(Object o) -> DecayLifetimeHandler"""
2759 return _IMP_bff._object_cast_to_DecayLifetimeHandler(o)
2761 r"""Proxy of C++ IMP::bff::DecayLifetimeHandler class."""
2763 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2765 def add_lifetime(self, amplitude, lifetime):
2766 r"""add_lifetime(DecayLifetimeHandler self, double amplitude, double lifetime)"""
2767 return _IMP_bff.DecayLifetimeHandler_add_lifetime(self, amplitude, lifetime)
2769 def get_lifetime_spectrum(self):
2770 r"""get_lifetime_spectrum(DecayLifetimeHandler self)"""
2771 return _IMP_bff.DecayLifetimeHandler_get_lifetime_spectrum(self)
2773 def __init__(self, *args, **kwargs):
2774 r"""__init__(DecayLifetimeHandler self, VectorDouble lifetime_spectrum=std::vector< double >(), bool use_amplitude_threshold=False, bool abs_lifetime_spectrum=False, double amplitude_threshold=std::numeric_limits< double >::epsilon()) -> DecayLifetimeHandler"""
2775 _IMP_bff.DecayLifetimeHandler_swiginit(self, _IMP_bff.new_DecayLifetimeHandler(*args, **kwargs))
2777 def get_version_info(self):
2778 r"""get_version_info(DecayLifetimeHandler self) -> VersionInfo"""
2779 return _IMP_bff.DecayLifetimeHandler_get_version_info(self)
2780 __swig_destroy__ = _IMP_bff.delete_DecayLifetimeHandler
2783 r"""__str__(DecayLifetimeHandler self) -> std::string"""
2784 return _IMP_bff.DecayLifetimeHandler___str__(self)
2787 r"""__repr__(DecayLifetimeHandler self) -> std::string"""
2788 return _IMP_bff.DecayLifetimeHandler___repr__(self)
2792 return _object_cast_to_DecayLifetimeHandler(o)
2794 abs_lifetime_spectrum = property(_IMP_bff.DecayLifetimeHandler_abs_lifetime_spectrum_get, _IMP_bff.DecayLifetimeHandler_abs_lifetime_spectrum_set, doc=
r"""abs_lifetime_spectrum : bool""")
2795 use_amplitude_threshold = property(_IMP_bff.DecayLifetimeHandler_use_amplitude_threshold_get, _IMP_bff.DecayLifetimeHandler_use_amplitude_threshold_set, doc=
r"""use_amplitude_threshold : bool""")
2796 amplitude_threshold = property(_IMP_bff.DecayLifetimeHandler_amplitude_threshold_get, _IMP_bff.DecayLifetimeHandler_amplitude_threshold_set, doc=
r"""amplitude_threshold : double""")
2797 lifetime_spectrum = property(_IMP_bff.DecayLifetimeHandler_lifetime_spectrum_get, _IMP_bff.DecayLifetimeHandler_lifetime_spectrum_set, doc=
r"""lifetime_spectrum : std::vector<(double,std::allocator<(double)>)>""")
2800 _IMP_bff.DecayLifetimeHandler_swigregister(DecayLifetimeHandler)
2803 _plural_types.append(
"DecayModifiers")
2804 _value_types.append(
"DecayModifier")
2806 class DecayModifier(DecayRange):
2807 r"""Proxy of C++ IMP::bff::DecayModifier class."""
2809 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2811 def __init__(self, *args, **kwargs):
2812 raise AttributeError(
"No constructor defined - class is abstract")
2814 def set_data(self, v):
2815 r"""set_data(DecayModifier self, DecayCurve v)"""
2816 return _IMP_bff.DecayModifier_set_data(self, v)
2819 r"""get_data(DecayModifier self) -> DecayCurve"""
2820 return _IMP_bff.DecayModifier_get_data(self)
2822 def set(self, data, start=0, stop=-1, active=True):
2823 r"""set(DecayModifier self, DecayCurve data, int start=0, int stop=-1, bool active=True)"""
2824 return _IMP_bff.DecayModifier_set(self, data, start, stop, active)
2826 def resize(self, n, v=0.0):
2827 r"""resize(DecayModifier self, size_t n, double v=0.0)"""
2828 return _IMP_bff.DecayModifier_resize(self, n, v)
2831 r"""add(DecayModifier self, DecayCurve out)"""
2832 return _IMP_bff.DecayModifier_add(self, out)
2833 __swig_destroy__ = _IMP_bff.delete_DecayModifier
2836 r"""__str__(DecayModifier self) -> std::string"""
2837 return _IMP_bff.DecayModifier___str__(self)
2840 r"""__repr__(DecayModifier self) -> std::string"""
2841 return _IMP_bff.DecayModifier___repr__(self)
2842 active = property(_IMP_bff.DecayModifier_active_get, _IMP_bff.DecayModifier_active_set, doc=
r"""active : bool""")
2844 data = property(get_data, set_data)
2847 def __call__(self, *args, **kwargs):
2848 self.add(*args, **kwargs)
2852 _IMP_bff.DecayModifier_swigregister(DecayModifier)
2854 DecayConvolutions=list
2855 _plural_types.append(
"DecayConvolutions")
2856 _value_types.append(
"DecayConvolution")
2858 class DecayConvolution(DecayModifier):
2859 r"""Proxy of C++ IMP::bff::DecayConvolution class."""
2861 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2862 FAST_PERIODIC_TIME = _IMP_bff.DecayConvolution_FAST_PERIODIC_TIME
2864 FAST_TIME = _IMP_bff.DecayConvolution_FAST_TIME
2866 FAST_PERIODIC = _IMP_bff.DecayConvolution_FAST_PERIODIC
2868 FAST = _IMP_bff.DecayConvolution_FAST
2870 FAST_AVX = _IMP_bff.DecayConvolution_FAST_AVX
2872 FAST_PERIODIC_AVX = _IMP_bff.DecayConvolution_FAST_PERIODIC_AVX
2876 def compute_corrected_irf(irf, corrected_irf, irf_shift_channels, irf_background_counts):
2877 r"""compute_corrected_irf(DecayCurve irf, DecayCurve corrected_irf, double irf_shift_channels, double irf_background_counts)"""
2878 return _IMP_bff.DecayConvolution_compute_corrected_irf(irf, corrected_irf, irf_shift_channels, irf_background_counts)
2881 def compute_mean_lifetime(irf_histogram, decay_histogram, micro_time_resolution):
2882 r"""compute_mean_lifetime(VectorDouble irf_histogram, VectorDouble decay_histogram, double micro_time_resolution) -> double"""
2883 return _IMP_bff.DecayConvolution_compute_mean_lifetime(irf_histogram, decay_histogram, micro_time_resolution)
2885 def set_irf(self, v):
2886 r"""set_irf(DecayConvolution self, DecayCurve v)"""
2887 return _IMP_bff.DecayConvolution_set_irf(self, v)
2890 r"""get_irf(DecayConvolution self) -> DecayCurve"""
2891 return _IMP_bff.DecayConvolution_get_irf(self)
2893 def get_mean_lifetime(self, decay):
2894 r"""get_mean_lifetime(DecayConvolution self, DecayCurve decay) -> double"""
2895 return _IMP_bff.DecayConvolution_get_mean_lifetime(self, decay)
2897 def set(self, *args, **kwargs):
2898 r"""set(DecayConvolution self, int convolution_method=FAST_PERIODIC_TIME, double excitation_period=100, double irf_shift_channels=0.0, double irf_background_counts=0)"""
2899 return _IMP_bff.DecayConvolution_set(self, *args, **kwargs)
2901 def __init__(self, *args, **kwargs):
2902 r"""__init__(DecayConvolution self, DecayLifetimeHandler lifetime_handler=None, DecayCurve instrument_response_function=None, int convolution_method=FAST, double excitation_period=100, double irf_shift_channels=0.0, double irf_background_counts=0, int start=0, int stop=-1, bool active=True) -> DecayConvolution"""
2903 _IMP_bff.DecayConvolution_swiginit(self, _IMP_bff.new_DecayConvolution(*args, **kwargs))
2904 __swig_destroy__ = _IMP_bff.delete_DecayConvolution
2907 r"""__str__(DecayConvolution self) -> std::string"""
2908 return _IMP_bff.DecayConvolution___str__(self)
2911 r"""__repr__(DecayConvolution self) -> std::string"""
2912 return _IMP_bff.DecayConvolution___repr__(self)
2913 corrected_irf = property(_IMP_bff.DecayConvolution_corrected_irf_get, doc=
r"""corrected_irf : r.IMP::bff::DecayCurve""")
2914 convolution_method = property(_IMP_bff.DecayConvolution_convolution_method_get, _IMP_bff.DecayConvolution_convolution_method_set, doc=
r"""convolution_method : int""")
2915 excitation_period = property(_IMP_bff.DecayConvolution_excitation_period_get, _IMP_bff.DecayConvolution_excitation_period_set, doc=
r"""excitation_period : double""")
2916 irf_shift_channels = property(_IMP_bff.DecayConvolution_irf_shift_channels_get, _IMP_bff.DecayConvolution_irf_shift_channels_set, doc=
r"""irf_shift_channels : double""")
2917 irf_background_counts = property(_IMP_bff.DecayConvolution_irf_background_counts_get, _IMP_bff.DecayConvolution_irf_background_counts_set, doc=
r"""irf_background_counts : double""")
2919 irf = property(get_irf, set_irf)
2923 _IMP_bff.DecayConvolution_swigregister(DecayConvolution)
2926 _plural_types.append(
"DecayPatterns")
2927 _value_types.append(
"DecayPattern")
2929 class DecayPattern(DecayModifier):
2930 r"""Proxy of C++ IMP::bff::DecayPattern class."""
2932 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2934 def __init__(self, constant_offset=0.0, pattern=None, pattern_fraction=0.0, start=0, stop=-1, active=True):
2935 r"""__init__(DecayPattern self, double constant_offset=0.0, DecayCurve pattern=None, double pattern_fraction=0.0, int start=0, int stop=-1, bool active=True) -> DecayPattern"""
2936 _IMP_bff.DecayPattern_swiginit(self, _IMP_bff.new_DecayPattern(constant_offset, pattern, pattern_fraction, start, stop, active))
2939 r"""__str__(DecayPattern self) -> std::string"""
2940 return _IMP_bff.DecayPattern___str__(self)
2943 r"""__repr__(DecayPattern self) -> std::string"""
2944 return _IMP_bff.DecayPattern___repr__(self)
2945 pattern = property(_IMP_bff.DecayPattern_pattern_get, _IMP_bff.DecayPattern_pattern_set, doc=
r"""pattern : p.IMP::bff::DecayCurve""")
2946 pattern_fraction = property(_IMP_bff.DecayPattern_pattern_fraction_get, _IMP_bff.DecayPattern_pattern_fraction_set, doc=
r"""pattern_fraction : double""")
2947 constant_offset = property(_IMP_bff.DecayPattern_constant_offset_get, _IMP_bff.DecayPattern_constant_offset_set, doc=
r"""constant_offset : double""")
2948 __swig_destroy__ = _IMP_bff.delete_DecayPattern
2951 _IMP_bff.DecayPattern_swigregister(DecayPattern)
2954 _plural_types.append(
"DecayPileups")
2955 _value_types.append(
"DecayPileup")
2957 class DecayPileup(DecayModifier):
2958 r"""Proxy of C++ IMP::bff::DecayPileup class."""
2960 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2962 def __init__(self, *args, **kwargs):
2963 r"""__init__(DecayPileup self, DecayCurve data, char const * pile_up_model="coates", double repetition_rate=100, double instrument_dead_time=120, int start=0, int stop=-1, bool active=True) -> DecayPileup"""
2964 _IMP_bff.DecayPileup_swiginit(self, _IMP_bff.new_DecayPileup(*args, **kwargs))
2967 r"""__str__(DecayPileup self) -> std::string"""
2968 return _IMP_bff.DecayPileup___str__(self)
2971 r"""__repr__(DecayPileup self) -> std::string"""
2972 return _IMP_bff.DecayPileup___repr__(self)
2973 instrument_dead_time = property(_IMP_bff.DecayPileup_instrument_dead_time_get, _IMP_bff.DecayPileup_instrument_dead_time_set, doc=
r"""instrument_dead_time : double""")
2974 repetition_rate = property(_IMP_bff.DecayPileup_repetition_rate_get, _IMP_bff.DecayPileup_repetition_rate_set, doc=
r"""repetition_rate : double""")
2975 pile_up_model = property(_IMP_bff.DecayPileup_pile_up_model_get, _IMP_bff.DecayPileup_pile_up_model_set, doc=
r"""pile_up_model : std::string""")
2976 __swig_destroy__ = _IMP_bff.delete_DecayPileup
2979 _IMP_bff.DecayPileup_swigregister(DecayPileup)
2981 DecayLinearizations=list
2982 _plural_types.append(
"DecayLinearizations")
2983 _value_types.append(
"DecayLinearization")
2985 class DecayLinearization(DecayModifier):
2986 r"""Proxy of C++ IMP::bff::DecayLinearization class."""
2988 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2990 def set_linearization_table(self, v):
2991 r"""set_linearization_table(DecayLinearization self, DecayCurve v)"""
2992 return _IMP_bff.DecayLinearization_set_linearization_table(self, v)
2994 def get_linearization_table(self):
2995 r"""get_linearization_table(DecayLinearization self) -> DecayCurve"""
2996 return _IMP_bff.DecayLinearization_get_linearization_table(self)
2998 def __init__(self, linearization_table, start, stop, active=True, n_window=5):
2999 r"""__init__(DecayLinearization self, DecayCurve linearization_table, int start, int stop, bool active=True, int n_window=5) -> DecayLinearization"""
3000 _IMP_bff.DecayLinearization_swiginit(self, _IMP_bff.new_DecayLinearization(linearization_table, start, stop, active, n_window))
3003 r"""__str__(DecayLinearization self) -> std::string"""
3004 return _IMP_bff.DecayLinearization___str__(self)
3007 r"""__repr__(DecayLinearization self) -> std::string"""
3008 return _IMP_bff.DecayLinearization___repr__(self)
3009 __swig_destroy__ = _IMP_bff.delete_DecayLinearization
3012 _IMP_bff.DecayLinearization_swigregister(DecayLinearization)
3015 _plural_types.append(
"DecayScales")
3016 _value_types.append(
"DecayScale")
3018 class DecayScale(DecayModifier):
3019 r"""Proxy of C++ IMP::bff::DecayScale class."""
3021 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3023 def set_blank_outside(self, v):
3024 r"""set_blank_outside(DecayScale self, double v)"""
3025 return _IMP_bff.DecayScale_set_blank_outside(self, v)
3027 def get_blank_outside(self):
3028 r"""get_blank_outside(DecayScale self) -> bool"""
3029 return _IMP_bff.DecayScale_get_blank_outside(self)
3031 def set(self, data=None, constant_background=0.0, start=0, stop=-1, active=True, blank_outside=True):
3032 r"""set(DecayScale self, DecayCurve data=None, double constant_background=0.0, int start=0, int stop=-1, bool active=True, bool blank_outside=True)"""
3033 return _IMP_bff.DecayScale_set(self, data, constant_background, start, stop, active, blank_outside)
3035 def __init__(self, data=None, constant_background=0.0, start=0, stop=-1, active=True, blank_outside=True):
3036 r"""__init__(DecayScale self, DecayCurve data=None, double constant_background=0.0, int start=0, int stop=-1, bool active=True, bool blank_outside=True) -> DecayScale"""
3037 _IMP_bff.DecayScale_swiginit(self, _IMP_bff.new_DecayScale(data, constant_background, start, stop, active, blank_outside))
3040 r"""__str__(DecayScale self) -> std::string"""
3041 return _IMP_bff.DecayScale___str__(self)
3044 r"""__repr__(DecayScale self) -> std::string"""
3045 return _IMP_bff.DecayScale___repr__(self)
3046 number_of_photons = property(_IMP_bff.DecayScale_number_of_photons_get, doc=
r"""number_of_photons : double""")
3047 constant_background = property(_IMP_bff.DecayScale_constant_background_get, _IMP_bff.DecayScale_constant_background_set, doc=
r"""constant_background : double""")
3048 __swig_destroy__ = _IMP_bff.delete_DecayScale
3051 _IMP_bff.DecayScale_swigregister(DecayScale)
3054 _plural_types.append(
"DecayScores")
3055 _value_types.append(
"DecayScore")
3057 class DecayScore(DecayRange):
3058 r"""Proxy of C++ IMP::bff::DecayScore class."""
3060 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3062 def get_model(self):
3063 r"""get_model(DecayScore self) -> DecayCurve"""
3064 return _IMP_bff.DecayScore_get_model(self)
3066 def set_model(self, v):
3067 r"""set_model(DecayScore self, DecayCurve v)"""
3068 return _IMP_bff.DecayScore_set_model(self, v)
3071 r"""get_data(DecayScore self) -> DecayCurve"""
3072 return _IMP_bff.DecayScore_get_data(self)
3074 def set_data(self, v):
3075 r"""set_data(DecayScore self, DecayCurve v)"""
3076 return _IMP_bff.DecayScore_set_data(self, v)
3078 def get_weighted_residuals(self):
3079 r"""get_weighted_residuals(DecayScore self) -> VectorDouble"""
3080 return _IMP_bff.DecayScore_get_weighted_residuals(self)
3082 def get_score(self, start=0, stop=-1, score_type=None):
3083 r"""get_score(DecayScore self, int start=0, int stop=-1, char const * score_type=None) -> double"""
3084 return _IMP_bff.DecayScore_get_score(self, start, stop, score_type)
3086 def set(self, *args, **kwargs):
3087 r"""set(DecayScore self, DecayCurve model, DecayCurve data, std::string score_type="poisson", int start=0, int stop=-1)"""
3088 return _IMP_bff.DecayScore_set(self, *args, **kwargs)
3090 def __init__(self, *args, **kwargs):
3091 r"""__init__(DecayScore self, DecayCurve model=None, DecayCurve data=None, std::string score_type="poisson", int start=0, int stop=-1) -> DecayScore"""
3092 _IMP_bff.DecayScore_swiginit(self, _IMP_bff.new_DecayScore(*args, **kwargs))
3093 __swig_destroy__ = _IMP_bff.delete_DecayScore
3096 r"""__str__(DecayScore self) -> std::string"""
3097 return _IMP_bff.DecayScore___str__(self)
3100 r"""__repr__(DecayScore self) -> std::string"""
3101 return _IMP_bff.DecayScore___repr__(self)
3102 score_type = property(_IMP_bff.DecayScore_score_type_get, _IMP_bff.DecayScore_score_type_set, doc=
r"""score_type : std::string""")
3103 score = property(_IMP_bff.DecayScore_score_get, doc=
r"""score : double""")
3105 model = property(get_model, set_model)
3108 data = property(get_data, set_data)
3111 weighted_residuals = property(
3112 lambda x: np.array(x.get_weighted_residuals())
3117 _IMP_bff.DecayScore_swigregister(DecayScore)
3119 def get_module_name():
3120 r"""get_module_name() -> std::string const"""
3121 return _IMP_bff.get_module_name()
3124 r"""get_module_version() -> std::string const"""
3125 return _IMP_bff.get_module_version()
3128 r"""get_example_path(std::string fname) -> std::string"""
3129 return _IMP_bff.get_example_path(fname)
3132 r"""get_data_path(std::string fname) -> std::string"""
3133 return _IMP_bff.get_data_path(fname)
3135 from .
import _version_check
void decay_fconv_per_cs(double *fit, double *x, double *lamp, int numexp, int stop, int n_points, double period, int conv_stop, double dt)
Convolve lifetime spectrum - fast convolution, high repetition rate, with convolution stop...
void decay_fconv_avx(double *fit, double *x, double *lamp, int numexp, int start, int stop, double dt=0.05)
Convolve lifetime spectrum with instrument response (fast convolution, AVX optimized for large lifeti...
CheckLevel get_check_level()
Get the current audit mode.
void decay_rescale_w_bg(double *fit, double *decay, double *e_sq, double bg, double *scale, int start, int stop)
Scale model function to the data (with weights and background)
Various classes to hold sets of particles.
void decay_fconv_cs_time_axis(double *inplace_output, int n_output, double *time_axis, int n_time_axis, double *irf, int n_irf, double *lifetime_spectrum, int n_lifetime_spectrum, int convolution_start=0, int convolution_stop=-1)
Make CGAL functionality available to IMP.
void decay_rescale_w(double *fit, double *decay, double *w_sq, double *scale, int start, int stop)
Scale model function to the data (with weights).
void decay_add_pile_up_to_model(double *model, int n_model, double *data, int n_data, double repetition_rate, double instrument_dead_time, double measurement_time, std::string pile_up_model="coates", int start=0, int stop=-1)
Add a pile-up distortion to the model function.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Composable functors to implement scores via compile-time composition.
double av_distance(const AV &a, const AV &b, double forster_radius=52.0, int distance_type=DYE_PAIR_DISTANCE_MEAN, int n_samples=10000)
Computes the distance to another accessible volume.
void decay_rescale(double *fit, double *decay, double *scale, int start, int stop)
Scale model function to the data (old version).
void decay_fconv(double *fit, double *x, double *lamp, int numexp, int start, int stop, double dt=0.05)
Convolve lifetime spectrum with instrument response (fast convolution, low repetition rate) ...
void decay_fconv_per(double *fit, double *x, double *lamp, int numexp, int start, int stop, int n_points, double period, double dt=0.05)
Convolve lifetime spectrum with instrument response (fast convolution, high repetition rate) ...
void decay_shift_lamp(double *lampsh, double *lamp, double ts, int n_points, double out_value=0.0)
shift instrument response function
Code to compute statistical measures.
std::vector< double > av_distance_distribution(const AV &av1, const AV &av2, std::vector< double > axis, int n_samples=10000)
Compute the distance to another accessible volume.
Class for sampling a density map from particles.
Common base class for heavy weight IMP objects.
void decay_sconv(double *fit, double *p, double *lamp, int start, int stop)
Convolve fluorescence decay curve with irf.
Basic utilities for handling cryo-electron microscopy 3D density maps.
void decay_fconv_per_cs_time_axis(double *model, int n_model, double *time_axis, int n_time_axis, double *irf, int n_irf, double *lifetime_spectrum, int n_lifetime_spectrum, int convolution_start=0, int convolution_stop=-1, double period=100.0)
void decay_fconv_ref(double *fit, double *x, double *lamp, int numexp, int start, int stop, double tauref, double dt=0.05)
Convolve lifetime spectrum - fast convolution with reference compound decay.
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
void write_path_map(PathMap *m, std::string filename, int value_type, const std::pair< float, float > bounds=std::pair< float, float >(std::numeric_limits< float >::min(), std::numeric_limits< float >::max()), const std::string &feature_name="")
Writes a path map to a file.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
void decay_fconv_per_avx(double *fit, double *x, double *lamp, int numexp, int start, int stop, int n_points, double period, double dt=0.05)
Convolve lifetime spectrum with instrument response (fast convolution, high repetition rate)...
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
void discriminate_small_amplitudes(double *lifetime_spectrum, int n_lifetime_spectrum, double amplitude_threshold)
std::vector< double > av_random_distances(const AV &av1, const AV &av2, int n_samples=10000)
Random sampling over AV/AV distances.
IMP::ParticleIndex search_labeling_site(const IMP::core::Hierarchy &hier, std::string json_str="", const nlohmann::json &json_data=nlohmann::json())
Find the particle index of a labeling site.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
ParticleIndexes get_indexes(const ParticlesTemp &ps)
Get the indexes from a list of particles.
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
std::string get_module_version()
Return the version of this module, as a string.
A restraint is a term in an IMP ScoringFunction.
int mod_p(int a, int n)
Compute the modulo of a number with respect to a positive integer.