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IMP Reference Guide
2.23.0
The Integrative Modeling Platform
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Fit rigid bodies to an image. More...
#include <IMP/em2d/RigidBodiesImageFitRestraint.h>
Inheritance diagram for IMP::em2d::RigidBodiesImageFitRestraint:Fit rigid bodies to an image.
Definition at line 43 of file RigidBodiesImageFitRestraint.h.
Public Member Functions | |
| RigidBodiesImageFitRestraint (ScoreFunction *scf, const core::RigidBodies &rbs, Image *img) | |
| Initialize the class. More... | |
| unsigned int | get_number_of_masks (const core::RigidBody &rb) const |
| Return the number of precomputed masks associated with the rigid body. More... | |
| virtual std::string | get_type_name () const override |
| virtual ::IMP::VersionInfo | get_version_info () const override |
| Get information about the module and version of the object. More... | |
| void | set_orientations (const core::RigidBody &rb, const algebra::Rotation3Ds &rots) |
| Set the possible rotations that a rigid body can have. More... | |
| void | set_projecting_parameters (const ProjectingParameters &p) |
| Public Member Functions inherited from IMP::Restraint | |
| Restraint (Model *m, std::string name) | |
| Create a restraint and register it with the model. More... | |
| Restraint () | |
| Default constructor. More... | |
| Restraint * | create_current_decomposition () const |
| Decompose this restraint into constituent terms for the current conf. More... | |
| Restraint * | create_decomposition () const |
| Decompose this restraint into constituent terms. More... | |
| virtual ScoringFunction * | create_scoring_function (double weight=1.0, double max=NO_MAX) const |
| Create a scoring function with only this restraint. More... | |
| virtual RestraintInfo * | get_dynamic_info () const |
| bool | get_is_aggregate () const |
| Return whether this restraint wraps a number of other restraints. More... | |
| double | get_last_last_score () const |
| Get the unweighted score from the last-but-one time it was evaluated. More... | |
| virtual double | get_last_score () const |
| double | get_score () const |
| virtual RestraintInfo * | get_static_info () const |
| bool | get_was_good () const |
| double | evaluate (bool calc_derivs) const |
| double | evaluate_moved (bool calc_derivs, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const |
| double | evaluate_moved_if_below (bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const |
| double | evaluate_moved_if_good (bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const |
| double | evaluate_if_good (bool calc_derivatives) const |
| double | evaluate_if_below (bool calc_derivatives, double max) const |
| virtual double | unprotected_evaluate_moved (DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const |
| Return the unweighted score, taking moving particles into account. More... | |
| virtual double | unprotected_evaluate_if_good (DerivativeAccumulator *da, double max) const |
| virtual double | unprotected_evaluate_if_below (DerivativeAccumulator *da, double max) const |
| The function calling this will treat any score >= max as bad. More... | |
| virtual double | unprotected_evaluate_moved_if_below (DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const |
| virtual double | unprotected_evaluate_moved_if_good (DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const |
| void | set_weight (Float weight) |
| Float | get_weight () const |
| double | get_maximum_score () const |
| void | set_maximum_score (double s) |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. More... | |
| bool | get_has_required_score_states () const |
| Return whether score states are computed. More... | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Get the interacting sets induced by this ModelObject. More... | |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| Get the score states that are ancestors of this in the dependency graph. More... | |
| void | set_has_dependencies (bool tf) |
| Either invalidate the dependencies or ensure they are correct. More... | |
| void | set_has_required_score_states (bool tf) |
| Compute the required score states. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Protected Member Functions | |
| unsigned int | get_rigid_body_index (const core::RigidBody &rb) const |
| Protected Member Functions inherited from IMP::Restraint | |
| virtual void | do_add_score_and_derivatives (ScoreAccumulator sa) const |
| virtual void | do_add_score_and_derivatives_moved (ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const |
| virtual Restraints | do_create_current_decomposition () const |
| virtual Restraints | do_create_decomposition () const |
| ModelObjectsTemp | do_get_outputs () const override |
| Protected Member Functions inherited from IMP::ModelObject | |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
Protected Attributes | |
| Pointer< Image > | image_ |
| KeyIndexMaps | maps_ |
| ProjectingParameters | params_ |
| bool | params_set_ |
| Pointer< Image > | projection_ |
| core::RigidBodies | rigid_bodies_ |
| std::vector< em2d::Images > | rigid_bodies_masks_ |
| PointerMember< ScoreFunction > | score_function_ |
| Protected Attributes inherited from IMP::Restraint | |
| bool | is_aggregate_ |
| IMP::em2d::RigidBodiesImageFitRestraint::RigidBodiesImageFitRestraint | ( | ScoreFunction * | scf, |
| const core::RigidBodies & | rbs, | ||
| Image * | img | ||
| ) |
Initialize the class.
| [in] | scf | Score function used to compute the value of the restraint |
| [in] | rbs | Rigid bodies that are restrained |
| [in] | img | Image used to compute the restraint |
| unsigned int IMP::em2d::RigidBodiesImageFitRestraint::get_number_of_masks | ( | const core::RigidBody & | rb | ) | const |
Return the number of precomputed masks associated with the rigid body.
| ValueException | if the rigid body is not in the set used to construct the restraint |
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overridevirtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 47 of file RigidBodiesImageFitRestraint.h.
| void IMP::em2d::RigidBodiesImageFitRestraint::set_orientations | ( | const core::RigidBody & | rb, |
| const algebra::Rotation3Ds & | rots | ||
| ) |
Set the possible rotations that a rigid body can have.
A projection of the rigid body in all possible orientations is stored