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IMP Reference Guide
2.23.0
The Integrative Modeling Platform
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A decay modifier to apply linearization to a DecayCurve. More...
#include <IMP/bff/DecayLinearization.h>
Inheritance diagram for IMP::bff::DecayLinearization:A decay modifier to apply linearization to a DecayCurve.
The DecayLinearization class is a subclass of DecayModifier. It takes a DecayCurve as input and computes a linearization table for the input curve. The linearization table is then applied to the input DecayCurve using the add() method.
Typical applications of DecayLinearization include computing a perturbed fluorescence decay model.
Definition at line 38 of file DecayLinearization.h.
Public Member Functions | |
| DecayLinearization (DecayCurve *linearization_table, int start, int stop, bool active=true, int n_window=5) | |
| void | add (DecayCurve *out) override |
| DecayCurve * | get_linearization_table () |
| void | set_linearization_table (DecayCurve *v) |
| Public Member Functions inherited from IMP::bff::DecayModifier | |
| DecayModifier (DecayCurve *data=nullptr, int start=0, int stop=-1, bool active=true) | |
| ~DecayModifier () | |
| virtual DecayCurve * | get_data () |
| bool | is_active () const |
| void | resize (size_t n, double v=0.0) |
| void | set (DecayCurve *data, int start=0, int stop=-1, bool active=true) |
| void | set_active (bool v) |
| virtual void | set_data (DecayCurve *v) |
| Public Member Functions inherited from IMP::bff::DecayRange | |
| DecayRange (int start, int stop) | |
| Constructor. More... | |
| virtual | ~DecayRange ()=default |
| Destructor. More... | |
| std::vector< int > | get_range (DecayCurve *d=nullptr) |
| Get the range as a vector of indices. More... | |
| size_t | get_start (DecayCurve *d=nullptr) const |
| Get the start index of the decay range. More... | |
| size_t | get_stop (DecayCurve *d=nullptr) const |
| Get the stop index of the decay range. More... | |
| void | set (int start=0, int stop=-1) |
| Set the start and stop indices of the decay range. More... | |
| void | set_range (std::vector< int > v) |
| Set the range using a vector of indices. More... | |
| void | set_start (int v) |
| Set the start index of the decay range. More... | |
| void | set_stop (int v) |
| Set the stop index of the decay range. More... | |
| void | show (std::ostream &out=std::cout) const |
Additional Inherited Members | |
| Protected Attributes inherited from IMP::bff::DecayModifier | |
| DecayCurve * | data = nullptr |
| DecayCurve * | default_data = nullptr |
| IMP::bff::DecayLinearization::DecayLinearization | ( | DecayCurve * | linearization_table, |
| int | start, | ||
| int | stop, | ||
| bool | active = true, |
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| int | n_window = 5 |
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| ) |
Construct a DecayLinearization object.
| linearization_table | The linearization table |
| start | The start index of the linearization window |
| stop | The stop index of the linearization window |
| active | Flag indicating if the DecayLinearization is active |
| n_window | The size of the linearization window |
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overridevirtual |
Apply the linearization table to the input DecayCurve.
| out | The output DecayCurve |
Implements IMP::bff::DecayModifier.
| DecayCurve* IMP::bff::DecayLinearization::get_linearization_table | ( | ) |
Get the linearization table of the DecayLinearization object.
| void IMP::bff::DecayLinearization::set_linearization_table | ( | DecayCurve * | v | ) |
Set the linearization table for the DecayLinearization object.
| v | The linearization table |