A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

A

AlignmentClustering (IMP.multifit.cluster)

DiameterRgyrRestraint (IMP::spb)

IsosurfaceGeometry (IMP::display)

PredicateSingletonScore (IMP::core)

SlabWithToroidalPorePairScore (IMP::npctransport)

AlignSymmetric (IMP::cnmultifit)

Diffusion (IMP::atom)

J

PredicateSingletonsRestraint (IMP::container)

SlabWithToroidalPoreWireGeometry (IMP::npctransport)

AllBipartitePairContainer (IMP::container)

Dihedral (IMP::atom)

PredicateTripletsRestraint (IMP::container)

Slave (IMP.parallel)

AllMol2Selector (IMP::atom)

DihedralAngleRevoluteJoint (IMP::kinematics)

JaccardDistanceMatrix (IMP.pmi.io.crosslink)

PrincipalComponentAnalysisD (IMP::algebra)

SlaveArray (IMP.parallel)

AllPairContainer (IMP::container)

DihedralRestraint (IMP::core)

JeffreysPrior (IMP.pmi.restraints.parameters)

PrismaticJoint (IMP::kinematics)

Slice (IMP::domino)

AllPDBSelector (IMP::atom)

DihedralSingletonScore (IMP::atom)

JeffreysRestraint (IMP::isd)

ProbabilisticAnchorGraph (IMP::multifit)

SmoothingFunction (IMP::atom)

AllSamePairPredicate (IMP::core)

Direction (IMP::core)

Joint (IMP::kinematics)

ProbabilisticSubsetFilterTable (IMP::domino)

Soap (IMP::score_functor)

AllSameQuadPredicate (IMP::core)

DirectionalDOF (IMP::kinematics)

JPGImageReaderWriter (IMP::em2d)

ProcessOutput (IMP.pmi.output)

SoapPairFilter (IMP::atom)

AllSameSingletonPredicate (IMP::core)

DirectionAngle (IMP::core)

K

Profile (IMP::saxs)

SoftCylinderPairScore (IMP::misc)

AllSameTripletPredicate (IMP::core)

DirectionMover (IMP::core)

ProfileClustering (IMP::saxs)

SoftSpherePairScore (IMP::core)

AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics)

DirectorObjectChecker (IMP.test)

KClosePairsPairScore (IMP::core)

ProfileFitter (IMP::saxs)

SoftSubSurfacePairScore (IMP::core)

AmbiguousNOERestraint (IMP::isd)

DiscreteSampler (IMP::domino)

KernelParameters (IMP::em)

Profiler (IMP::benchmark)

SoftSuperSurfacePairScore (IMP::core)

AmbiguousRestraint (IMP::isd)

DisjointSetsSubsetFilterTable (IMP::domino)

Key (IMP)

ProjectingOptions (IMP::em2d)

SoftwareProvenance (IMP::core)

Analysis (IMP.isd.Analysis)

DistanceFilter (IMP::em2d)

KinematicForest (IMP::kinematics)

ProjectingParameters (IMP::em2d)

SolventAccessibleSurface (IMP::saxs)

AnalysisReplicaExchange (IMP.pmi.macros)

DistanceFilterTable (IMP::em2d)

KinematicForestScoreState (IMP::kinematics)

ProjectionFinder (IMP::em2d)

SparseGrid3D (IMP::algebra)

AnalysisReplicaExchange0 (IMP.pmi.macros)

DistanceMask (IMP::em)

KinematicNode (IMP::kinematics)

ProjectionMask (IMP::em2d)

SparseGridStorageD (IMP::algebra)

AnchorsData (IMP::multifit)

DistancePairScore (IMP::score_functor)

KinkPairScore (IMP::spb)

ProjectionParameters (IMP::em2d)

SparseSymmetricPairMemoizer (IMP)

AnchorToCylidnricalPorePairScore (IMP::npctransport)

DistancePairScore (IMP::core)

KMeans (IMP::kmeans)

ProjectionParametersScoreState (IMP::em2d)

SparseUnboundedGrid3D (IMP::algebra)

AndPDBSelector (IMP::atom)

DistanceRestraint (IMP.pmi.restraints.basic)

L

ProjectionStates (IMP::em2d)

SparseUnboundedGridD (IMP::algebra)

Angle (IMP::atom)

DistanceRestraint (IMP::core)

ProteinChainRestraint (IMP::npc)

SphereD (IMP::algebra)

AngleRestraint (IMP::core)

DistanceRMSDMetric (IMP::spb)

LabelGeometry (IMP::display)

ProteinContactRestraint (IMP::npc)

SphereDistance (IMP::score_functor)

AngleSingletonScore (IMP::atom)

DistanceTerminiRestraint (IMP::spb)

LangevinThermostatOptimizerState (IMP::atom)

ProteinKinematics (IMP::kinematics)

SphereDistancePairScore (IMP::core)

AngleTripletScore (IMP::core)

DistanceToPointRestraint (IMP.pmi.restraints.basic)

LateralSurfaceConstraint (IMP::core)

ProteinLigandAtomPairScore (IMP::atom)

SphereDistanceToSingletonScore (IMP::core)

AngularVelocity (IMP::atom)

DistributePairsScoreState (IMP::container)

LeavesRefiner (IMP::core)

ProteinLigandRestraint (IMP::atom)

SphereGeometry (IMP::display)

ApplicationTestCase (IMP.test)

DistributeQuadsScoreState (IMP::container)

LennardJones (IMP::atom)

ProteinProximityRestraint (IMP::npc)

SpherePatch3D (IMP::algebra)

Array (IMP)

DistributeSingletonsScoreState (IMP::container)

LennardJonesPairScore (IMP::atom)

ProteinsAnchorsSamplingSpace (IMP::multifit)

SphericalVector3D (IMP::algebra)

AssemblyHeader (IMP::multifit)

DistributeTripletsScoreState (IMP::container)

LessPairBySecond (IMP::em2d)

ProteomicsData (IMP::multifit)

SpiderHeader (IMP::em)

AssemblySymmetryByDihedralRestraint (IMP::npc)

Distribution (IMP::saxs)

Line3D (IMP::algebra)

ProteomicsEMAlignmentAtomic (IMP::multifit)

SpiderImageReaderWriter (IMP::em2d)

AssemblySymmetryByDistanceRestraint (IMP::npc)

Distribution (IMP::isd)

Linear (IMP::core)

ProtocolOutput (IMP.pmi.output)

SpiderMapReaderWriter (IMP::em)

Assignment (IMP::domino)

DockOrder (IMP.EMageFit.buildxlinks)

Linear1DFunction (IMP::isd)

ProtocolOutput (IMP.pmi.mmcif)

State (IMP.mmcif.util)

AssignmentContainer (IMP::domino)

DOF (IMP::kinematics)

LinearFit2D (IMP::algebra)

Provenance (IMP::core)

State (IMP::atom)

AssignmentsTable (IMP::domino)

DOFsSampler (IMP::kinematics)

LinearInteraction (IMP::npctransport)

Provenanced (IMP::core)

State (IMP.pmi.topology)

AsymUnit (IMP.pmi.mmcif)

DOFValues (IMP::kinematics)

LinearInteractionPairScore (IMP::npctransport)

PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry)

StateAdaptor (IMP::misc)

Atom (IMP::atom)

Domain (IMP::atom)

LinearLowerBound (IMP::score_functor)

PymolWriter (IMP::display)

StatHierarchyHandler (IMP.pmi.output)

AtomicCrossLinkMSRestraint (IMP.pmi.restraints.crosslinking)

DominoModel (IMP.EMageFit.domino_model)

LinearSoftSpherePairScore (IMP::npctransport)

PythonDirectedGraph (IMP)

Statistical (IMP::score_functor)

AtomicCrossLinkMSRestraint (IMP::isd)

DominoSampler (IMP::domino)

LinearVelocity (IMP::atom)

PythonExampleConstraint (IMP.example)

StatisticalPairScore (IMP::core)

ATOMPDBSelector (IMP::atom)

Dope (IMP::score_functor)

LinearWellPairScore (IMP::npctransport)

PythonExamplePairScore (IMP.example)

Statistics (IMP.isd.Statistics)

AtomType (IMP::atom)

DopePairScore (IMP::atom)

ListAssignmentContainer (IMP::domino)

PythonExampleRestraint (IMP.example)

Statistics (IMP::npctransport)

AtomTypePDBSelector (IMP::atom)

DummyRestraint (IMP::em2d)

ListAssignmentsTable (IMP::domino)

PythonExampleSingletonModifier (IMP.example)

SteepestDescent (IMP::core)

AttributeDistancePairScore (IMP::spb)

DummyRestraint (IMP::multifit)

ListPairContainer (IMP::container)

PythonExampleUnaryFunction (IMP.example)

StereochemistryPairFilter (IMP::atom)

AttributeOptimizer (IMP)

DynamicListPairContainer (IMP::container)

ListQuadContainer (IMP::container)

Q

Stopwatch (IMP.pmi.tools)

AttributeSingletonPredicate (IMP::core)

DynamicListQuadContainer (IMP::container)

ListSingletonContainer (IMP::container)

StructureProvenance (IMP::core)

AverageDistanceLinkage (IMP::em2d)

DynamicListSingletonContainer (IMP::container)

ListSubsetFilterTable (IMP::domino)

QuadConstraint (IMP::core)

StructureSource (IMP::atom)

B

DynamicListTripletContainer (IMP::container)

ListTripletContainer (IMP::container)

QuadContainer (IMP)

StudentTRestraint (IMP::isd)

DynamicNearestNeighbor3D (IMP::algebra)

LoadLink (IMP::rmf)

QuadContainerAdaptor (IMP)

Subset (IMP::domino)

BackbonePDBSelector (IMP::atom)

E

LocalPlanner (IMP::kinematics)

QuadContainerSet (IMP::container)

SubsetFilter (IMP::domino)

BallMover (IMP::symmetry)

LocalSlave (IMP.parallel)

QuadContainerStatistics (IMP::container)

SubsetFilterTable (IMP::domino)

BallMover (IMP::core)

EdgePairGeometry (IMP::core)

LogEmbeddingD (IMP::algebra)

QuadModifier (IMP)

SubsetMover (IMP::core)

BerendsenThermostatOptimizerState (IMP::atom)

EdgePairsGeometry (IMP::core)

LogHolder (IMP.isd.demux_trajs)

QuadPredicate (IMP)

Surface (IMP::core)

BinormalTerm (IMP::core)

ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry)

LognormalAmbiguousRestraint (IMP::isd)

QuadraticClosePairsFinder (IMP::core)

SurfaceDepthPairScore (IMP::core)

BipartitePairsStatisticsOptimizerState (IMP::npctransport)

ElectronMicroscopy2D (IMP.pmi.restraints.em2d)

LogNormalMover (IMP::core)

QuadRestraint (IMP::core)

SurfaceDepthPairScore (IMP::score_functor)

BiStableDistanceRestraint (IMP.pmi.restraints.basic)

ElectronMicroscopy2D_FFT (IMP.pmi.restraints.em2d)

LognormalRestraint (IMP::isd)

QuadsConstraint (IMP::container)

SurfaceDistancePairScore (IMP::score_functor)

BivariateFunction (IMP::isd)

ElementTable (IMP::atom)

LogPairScore (IMP::misc)

QuadScore (IMP)

SurfaceDistancePairScore (IMP::core)

BodyStatisticsOptimizerState (IMP::npctransport)

Ellipsoid3D (IMP::algebra)

LogWrapper (IMP::isd)

QuadsOptimizerState (IMP::container)

SurfaceGeometry (IMP::core)

Bond (IMP::atom)

EllipsoidGeometry (IMP::display)

LowestRefinedPairScore (IMP::misc)

QuadsRestraint (IMP::container)

SurfaceGeometryConstraint (IMP::core)

ForceFieldParameters::Bond (IMP::atom)

EM2DRestraint (IMP::spb)

LRUCache (IMP)

QuasiNewton (IMP::gsl)

SurfaceHeightPairScore (IMP::score_functor)

BondAngleRevoluteJoint (IMP::kinematics)

Em2DRestraint (IMP::em2d)

M

R

SurfaceHeightPairScore (IMP::core)

Bonded (IMP::atom)

Em2DRestraintParameters (IMP::em2d)

SurfaceMeshGeometry (IMP::display)

BondedPairFilter (IMP::atom)

EM2DScore (IMP::em2d)

Manager (IMP.parallel)

RadialDistributionFunction (IMP::saxs)

SurfaceMover (IMP::core)

BondEndpointsRefiner (IMP::atom)

Embedding (IMP::statistics)

MapCrossLinkDataBaseOnStructure (IMP.pmi.io.crosslink)

RadiusDependentDistanceMask (IMP::em)

SurfacesGeometry

BondGeometry (IMP::atom)

EMReaderWriter (IMP::em)

MapDistanceTransform (IMP::em)

RadiusOfGyrationRestraint (IMP::saxs)

SurfaceShellDensityMap (IMP::em)

BondGraph (IMP::atom)

Ensemble (IMP.mmcif.util)

MapReaderWriter (IMP::em)

RadiusOfGyrationRestraint (IMP::multifit)

SurfaceSymmetryConstraint (IMP::core)

BondPairContainer (IMP::atom)

Ensemble (IMP::multifit)

MarginalHBondRestraint (IMP::isd)

RAII (IMP)

SurfaceTetheredChain (IMP::core)

BondsGeometry (IMP::atom)

EnsembleGenerator (IMP::multi_state)

MarginalNOERestraint (IMP::isd)

RangeViewAssignmentContainer (IMP::domino)

Switching (IMP::isd)

BondSingletonScore (IMP::atom)

Entity (IMP.pmi.mmcif)

MasksManager (IMP::em2d)

RatioVolatilityScore (IMP::saxs)

Symmetric (IMP::pmi)

BoundedGridRangeD (IMP::algebra)

Entry (IMP.isd.Entry)

Mass (IMP::atom)

ReadAssignmentContainer (IMP::domino)

SymmetryRestraint (IMP.pmi.restraints.stereochemistry)

BoundingBoxD (IMP::algebra)

EnvelopeFitRestraint (IMP::em)

MasterCommunicator (IMP.parallel.master_communicator)

ReadHDF5AssignmentContainer (IMP::domino)

System (IMP.pmi.topology)

BoundingBoxGeometry (IMP::display)

EnvelopePenetrationRestraint (IMP::em)

MatchTemplateResult (IMP::em2d)

RecursiveAssignmentsTable (IMP::domino)

T

BoxedMover (IMP::spb)

EnvelopeScore (IMP::em)

MaxVectorKDMetric (IMP::algebra)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

BoxSweepClosePairsFinder (IMP::core)

EqualitySubsetFilterTable (IMP::domino)

MCCGSampler (IMP::core)

RecursivePartitionalClusteringMetric (IMP::statistics)

TableRefiner (IMP::core)

BranchAndBoundAssignmentsTable (IMP::domino)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MeanAbsoluteDifference (IMP::em2d)

RecursiveStates (IMP::domino)

TALOSReader (IMP.isd.TALOSReader)

BranchAndBoundSampler (IMP::domino)

EquivalenceSubsetFilterTable (IMP::domino)

MembraneExclusionRestraint (IMP.npc.npc_restraints)

RefCountChecker (IMP.test)

TALOSRestraint (IMP::isd)

BrownianDynamics (IMP::atom)

Error (IMP.parallel)

MembraneExclusionRestraint (IMP::npc)

Reference (IMP::core)

TAMDCentroid (IMP::atom)

BrownianDynamicsTAMD (IMP::atom)

EuclideanMetric (IMP::statistics)

MembraneRestraint (IMP::pmi)

ReferenceFrame3D (IMP::algebra)

TAMDParticle (IMP::atom)

BrownianDynamicsTAMDWithSlabSupport (IMP::npctransport)

EuclideanVectorKDMetric (IMP::algebra)

MembraneSurfaceLocationConditionalRestraint (IMP.npc.npc_restraints)

ReferenceFrameGeometry (IMP::display)

TempDir (IMP.test)

BuildModel (IMP.pmi.macros)

LinearInteractionPairScore::EvaluationCache (IMP::npctransport)

MembraneSurfaceLocationConditionalRestraint (IMP::npc)

ReferenceFrameToText (IMP.EMageFit.imp_general.io)

TempResidue (IMP.pmi.topology)

BuildModel1 (IMP.pmi.macros)

EvaluationState (IMP)

MembraneSurfaceLocationRestraint (IMP.npc.npc_restraints)

RefinedPairsPairScore (IMP::core)

TestCase (IMP.test)

BuildSystem (IMP.pmi.macros)

EventException (IMP)

MembraneSurfaceLocationRestraint (IMP::npc)

Refiner (IMP)

TextInput (IMP)

C

EventPairsOptimizerState (IMP::container)

Memoizer (IMP)

Reflection3D (IMP::algebra)

TextOutput (IMP)

EventQuadsOptimizerState (IMP::container)

MergeTreeBuilder (IMP::multifit)

RegistrationResult (IMP::em2d)

TextWriter (IMP::display)

CAAngleRestraint (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

Metric (IMP::statistics)

RelativePositionMover (IMP::em2d)

ThreeToOneConverter (IMP.pmi.tools)

CADihedralRestraint (IMP::atom)

EventTripletsOptimizerState (IMP::container)

MetricClosePairsFinder (IMP::misc)

RelaxingSpring (IMP::npctransport)

TIFFImageReaderWriter (IMP::em2d)

CAlphaPDBSelector (IMP::atom)

ExampleComplexRestraint (IMP::example)

MinimumPairRestraint (IMP::container)

RemoteError (IMP.parallel)

TiltSingletonScore (IMP::spb)

CappedAssignmentContainer (IMP::domino)

ExampleConstraint (IMP::example)

MinimumPairScore (IMP::container)

RemoveRigidMotionOptimizerState (IMP::atom)

TopologyPlot (IMP.pmi.plotting.topology)

CBetaPDBSelector (IMP::atom)

ExampleDecorator (IMP::example)

MinimumQuadRestraint (IMP::container)

RemoveTranslationOptimizerState (IMP::atom)

TopologyReader (IMP.pmi.topology)

CCDLoopClosure (IMP::kinematics)

ExampleObject (IMP::example)

MinimumQuadScore (IMP::container)

ReplicaExchange (IMP.pmi.samplers)

Torus3D (IMP::algebra)

CellMover (IMP::spb)

ExamplePairScore (IMP::example)

MinimumRestraint (IMP::core)

ReplicaExchange (IMP::mpi)

TotalScoreOutput (IMP.pmi.io)

CenteredMat (IMP::em2d)

ExampleRestraint (IMP::example)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

ReplicaExchange0 (IMP.pmi.macros)

Transform (IMP::core)

CenterOfMass (IMP::atom)

ExampleSingletonModifier (IMP::example)

MinimumSingletonRestraint (IMP::container)

Representation (IMP.pmi.representation)

Transformation2D (IMP::algebra)

Centroid (IMP::core)

ExampleSubsetFilterTable (IMP::example)

MinimumSingletonScore (IMP::container)

Representation (IMP::atom)

Transformation3D (IMP::algebra)

CentroidOfRefined (IMP::core)

ExampleTemplateClassD (IMP::example)

MinimumSphereDistancePairScore (IMP::npc)

RepulsiveDistancePairScore (IMP::isd)

Transformation3DToText (IMP.EMageFit.imp_general.io)

Chain (IMP::atom)

ExampleUnaryFunction (IMP::example)

MinimumTripletRestraint (IMP::container)

Residue (IMP::atom)

TransformationAndReflectionSymmetry (IMP::core)

ChainPDBSelector (IMP::atom)

Exception (IMP)

MinimumTripletScore (IMP::container)

ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry)

TransformationJoint (IMP::kinematics)

ChainStatisticsOptimizerState (IMP::npctransport)

ExcludedVolumeRestraint (IMP::core)

Model (IMP)

ResidueBondRestraint (IMP.pmi.restraints.stereochemistry)

TransformationSymmetry (IMP::spb)

ChainType (IMP::atom)

ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry)

ModelException (IMP)

ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry)

TransformationSymmetry (IMP::core)

Charged (IMP::atom)

ExcludeZRangeSingletonScore (IMP::npctransport)

ModellerRestraints (IMP.modeller)

ResiduePairListParser (IMP.pmi.io.crosslink)

TransformationSymmetryMover (IMP::core)

CHARMMAtom (IMP::atom)

ExclusionSubsetFilterTable (IMP::domino)

ModelLoader (IMP.modeller)

ResidueRotamer (IMP::rotamer)

TransformedDistancePairScore (IMP::core)

CHARMMAtomTopology (IMP::atom)

ExclusiveConsecutivePairContainer (IMP::container)

ModelObject (IMP)

ResidueType (IMP::atom)

TransformMover (IMP::pmi)

CHARMMBondEndpoint (IMP::atom)

ExclusiveConsecutivePairFilter (IMP::container)

ModifierVisitor (IMP::core)

ResidueTypePDBSelector (IMP::atom)

Transporting (IMP::npctransport)

CHARMMBondParameters (IMP::atom)

ExtendedGridIndexD (IMP::algebra)

Mol2Selector (IMP::atom)

Resolution (IMP::pmi)

Triangle3D (IMP::algebra)

CHARMMConnection (IMP::atom)

ExternalBarrier (IMP.pmi.restraints.basic)

MolCnSymmAxisDetector (IMP::cnmultifit)

Restraint (IMP::saxs)

TriangleGeometry (IMP::display)

CHARMMDihedralParameters (IMP::atom)

EzRestraint (IMP::atom)

MolecularDynamics (IMP::atom)

Restraint (IMP)

TripletConstraint (IMP::core)

CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry)

F

MolecularDynamics (IMP.pmi.samplers)

RestraintBase (IMP.pmi.restraints)

TripletContainer (IMP)

CHARMMIdealResidueTopology (IMP::atom)

MolecularDynamics (IMP::isd)

RestraintCache (IMP::domino)

TripletContainerAdaptor (IMP)

CHARMMInternalCoordinate (IMP::atom)

FFTFitting (IMP::multifit)

MolecularDynamicsMover (IMP::isd)

RestraintGeometry (IMP::display)

TripletContainerSet (IMP::container)

CHARMMParameters (IMP::atom)

FFTFittingOutput (IMP::multifit)

MolecularDynamicsWithWte (IMP::spb)

RestraintInfo (IMP)

TripletContainerStatistics (IMP::container)

CHARMMPatch (IMP::atom)

FGChain (IMP::npctransport)

Molecule (IMP::atom)

RestraintsAdaptor (IMP)

TripletModifier (IMP)

CHARMMResidueTopology (IMP::atom)

FilterGeometry (IMP::display)

Molecule (IMP.pmi.topology)

RestraintScoreSubsetFilterTable (IMP::domino)

TripletPredicate (IMP)

CHARMMResidueTopologyBase (IMP::atom)

FilterOperator (IMP.pmi.io.crosslink)

MonteCarlo (IMP.pmi.samplers)

RestraintSet (IMP)

TripletRestraint (IMP::core)

CHARMMSegmentTopology (IMP::atom)

FilterProvenance (IMP::core)

MonteCarlo (IMP::core)

RestraintSetGeometry (IMP::display)

TripletsConstraint (IMP::container)

CHARMMStereochemistryRestraint (IMP::atom)

Fine2DRegistrationRestraint (IMP::em2d)

MonteCarloMover (IMP::core)

RestraintsScoringFunction (IMP::core)

TripletScore (IMP)

CHARMMTopology (IMP::atom)

FitParameters (IMP::saxs)

MonteCarloMoverResult (IMP::core)

ResultsDB (IMP.EMageFit.solutions_io)

TripletsOptimizerState (IMP::container)

ChecksScoreState (IMP::core)

FitRestraint (IMP::em)

MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo)

RevoluteJoint (IMP::kinematics)

TripletsRestraint (IMP::container)

ChiFreeScore (IMP::saxs)

FittingSolutionRecord (IMP::multifit)

MonteCarloWithBasinHopping (IMP::core)

RevoluteJointMover (IMP::kinematics)

TruncatedHarmonic (IMP::core)

ChildrenRefiner (IMP::core)

FittingSolutions (IMP::em)

MonteCarloWithLocalOptimization (IMP::core)

RigidBodiesImageFitRestraint (IMP::em2d)

TwoStateGoModelRestraint (IMP::spb)

ChiScore (IMP::saxs)

FittingStates (IMP::multifit)

MonteCarloWithWte (IMP::spb)

RigidBodiesProfileHandler (IMP::saxs)

Typed (IMP::core)

ChiScoreLog (IMP::saxs)

FixedFormatParser (IMP.pmi.io.crosslink)

MoveStatisticsScoreState (IMP::core)

RigidBody (IMP::core)

TypedPairScore (IMP::core)

ChiSquaredScore (IMP::em2d)

FixedRefiner (IMP::core)

MRCReaderWriter (IMP::em)

RigidBodyAnglePairScore (IMP::core)

TypedSitesGeometry (IMP::npctransport)

ChiSquareMetric (IMP::spb)

FixedXYZ (IMP::algebra)

MSConnectivityRestraint (IMP::core)

RigidBodyDerivativeGeometry (IMP::core)

TypeException (IMP)

ChiSquareMetric (IMP::statistics)

Flag (IMP)

MultipleBinormalRestraint (IMP::core)

RigidBodyDerivativesGeometry (IMP::core)

U

CloseBipartitePairContainer (IMP::container)

FloatIndex (IMP)

MultiStateModel (IMP::multi_state)

RigidBodyDiffusion (IMP::atom)

ClosedCubicSpline (IMP::core)

FNormal (IMP::isd)

MultiStateModelScore (IMP::multi_state)

RigidBodyDistancePairScore (IMP::core)

UnaryFunction (IMP)

ClosePairContainer (IMP::container)

ForceFieldParameters (IMP::atom)

MultivariateFNormalSufficient (IMP::isd)

RigidBodyFrameGeometry (IMP::core)

UnaryFunctionEvaluate (IMP::score_functor)

ClosePairsFinder (IMP::core)

ForceSwitch (IMP::atom)

MyMetric (write_a_metric)

RigidBodyFramesGeometry (IMP::core)

UnboundedGridRangeD (IMP::algebra)

ClosePairsPairScore (IMP::core)

FormFactorTable (IMP::saxs)

N

RigidBodyHierarchyGeometry (IMP::core)

Uncertainty (IMP::pmi)

Cluster (IMP.pmi.output)

Fragment (IMP::atom)

RigidBodyMember (IMP::core)

UncheckedWeakPointer (IMP)

Clustering (IMP.pmi.analysis)

FreelyJointedChain (IMP::misc)

NearestNeighborD (IMP::algebra)

RigidBodyMover (IMP::core)

Undecorator (IMP)

ClusterProvenance (IMP::core)

FretData (IMP::isd)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodyMover (IMP::symmetry)

UniformBackboneSampler (IMP::kinematics)

ClusterSet (IMP::em2d)

FretRestraint (IMP::isd)

NeighborsTable (IMP::core)

RigidBodyNewMover (IMP::spb)

UniformBoundedRestraint (IMP::spb)

CnSymmAxisDetector (IMP::cnmultifit)

FStudentT (IMP::isd)

NestedRigidBodyStates (IMP::domino)

RigidBodyPackingScore (IMP::spb)

UniformPrior (IMP::isd)

CoarseCC (IMP::em)

FunctorLinearInteractionPairScore (IMP::npctransport)

NetworkError (IMP.parallel)

RigidBodyStates (IMP::domino)

UnivariateFunction (IMP::isd)

CoarseCCatIntervals (IMP::em)

FunctorLinearSoftSpherePairScore (IMP::npctransport)

NOERestraint (IMP::isd)

RigidBodyTorque (IMP::core)

UnorderedTypePairPredicate (IMP::core)

CoarseConvolution (IMP::em)

FusionRestraint (IMP.pmi.restraints.stereochemistry)

NoMoreSlavesError (IMP.parallel)

RigidBodyTunneler (IMP::core)

UnorderedTypeQuadPredicate (IMP::core)

CoinFlipPairPredicate (IMP::core)

FuzzyBoolean (IMP.pmi.restraints.proteomics)

NonAlternativePDBSelector (IMP::atom)

RigidBodyUmbrella (IMP::core)

UnorderedTypeSingletonPredicate (IMP::core)

CoinFlipQuadPredicate (IMP::core)

FuzzyRestraint (IMP.pmi.restraints.proteomics)

NonCopyable (IMP)

RigidClosePairsFinder (IMP::core)

UnorderedTypeTripletPredicate (IMP::core)

CoinFlipSingletonPredicate (IMP::core)

G

NonHydrogenMol2Selector (IMP::atom)

RigidLeavesRefiner (IMP::multifit)

UsageException (IMP)

CoinFlipTripletPredicate (IMP::core)

NonHydrogenPDBSelector (IMP::atom)

RigidMember (IMP::core)

V

CollisionCrossSection (IMP::em2d)

Gaussian (IMP::spb)

NonRigidMember (IMP::core)

RMFFrame (IMP.mmcif.util)

Color (IMP::display)

Gaussian (IMP::core)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RMFHierarchyHandler (IMP.pmi.output)

Value (IMP)

ColorChange (IMP.pmi.tools)

Gaussian3D (IMP::algebra)

NonWaterPDBSelector (IMP::atom)

RMSD (IMP.pmi.analysis)

ValueException (IMP)

Colored (IMP::display)

GaussianAnchorEMRestraint (IMP::isd)

NormalizedSphereDistancePairScore (IMP::core)

RMSDMetric (IMP::spb)

Vector (IMP)

CombineProvenance (IMP::core)

GaussianEMRestraint (IMP.pmi.restraints.em)

NormalMover (IMP::core)

RMSDOutput (IMP.pmi.io)

VectorBaseD (IMP::algebra)

CommandDispatcher (IMP)

GaussianEMRestraint (IMP::isd)

NotPDBSelector (IMP::atom)

RotamerAngleTuple (IMP::rotamer)

VectorD (IMP::algebra)

CommonEndpointPairFilter (IMP::misc)

GaussianProcessInterpolation (IMP::isd)

NPDBSelector (IMP::atom)

RotamerCalculator (IMP::rotamer)

VectorDEmbedding (IMP::statistics)

CompareMultiStateModels (IMP::multi_state)

GaussianProcessInterpolationRestraint (IMP::isd)

Nuisance (IMP::isd)

RotamerLibrary (IMP::rotamer)

VectorKDMetric (IMP::algebra)

ComplementarityRestraint (IMP::multifit)

GaussianRestraint (IMP::isd)

NuisanceRangeModifier (IMP::spb)

Rotation2D (IMP::algebra)

VelocityScalingOptimizerState (IMP::atom)

CompleteLinkage (IMP::em2d)

GeneralizedGuinierPorodFunction (IMP::isd)

O

Rotation3D (IMP::algebra)

VersionInfo (IMP)

ComponentHeader (IMP::multifit)

GenericAttributeSingletonScore (IMP::core)

RRT (IMP::kinematics)

VolumeRestraint (IMP::core)

CompositeJoint (IMP::kinematics)

GenericBoundingBox3DSingletonScore (IMP::core)

Object (IMP)

RRT::RRTNode (IMP::kinematics)

Voxel (IMP::em)

CompositeRestraint (IMP.pmi.restraints.proteomics)

GenericDistanceToSingletonScore (IMP::core)

OneDimensionalDistribution (IMP::isd)

RunInTempDir (IMP.test)

W

CompositeRestraint (IMP::npc)

GeometricHash (IMP::multifit)

OneDimensionalSufficientDistribution (IMP::isd)

S

CompositeRestraint (IMP::pmi)

GeometricPrimitiveD (IMP::algebra)

OpenCubicSpline (IMP::score_functor)

WarningContext (IMP)

CompoundStates (IMP::domino)

Geometry (IMP::display)

OpenCubicSpline (IMP::core)

SameParticlePairFilter (IMP::spb)

WaterPDBSelector (IMP::atom)

Cone3D (IMP::algebra)

GeometryProcessor (IMP::display)

Optimizer (IMP)

SameResiduePairFilter (IMP::atom)

WeakPointer (IMP)

Configuration (IMP)

GeometrySet (IMP::display)

OptimizerState (IMP)

SameRigidBodyPairFilter (IMP::spb)

Weight (IMP::isd)

ConfigurationSet (IMP)

GetModelDensity (IMP.pmi.analysis)

OptionParser (IMP)

SampleAssignmentContainer (IMP::domino)

WeightedDerivativesToRefined (IMP::core)

ConfigurationSetRMSDMetric (IMP::statistics)

GlobalStatisticsOptimizerState (IMP::npctransport)

Order (IMP::domino)

SampledDensityMap (IMP::em)

WeightedExcludedVolumeRestraint (IMP::multifit)

ConfigurationSetXYZEmbedding (IMP::statistics)

GridClosePairsFinder (IMP::core)

OrderedDefaultDict (IMP.pmi.tools)

SampleProvenance (IMP::core)

WeightedFitParameters (IMP::saxs)

ConjugateGradients (IMP.pmi.samplers)

GridD (IMP::algebra)

OrderedTypePairPredicate (IMP::core)

Sampler (IMP)

WeightedProfileFitter (IMP::saxs)

ConjugateGradients (IMP::gsl)

GridIndexD (IMP::algebra)

OrderedTypeQuadPredicate (IMP::core)

SaveLink (IMP::rmf)

WeightedSphereDistancePairScore (IMP::core)

ConjugateGradients (IMP::core)

GridStates (IMP::em2d)

OrderedTypeSingletonPredicate (IMP::core)

SaveOptimizerState (IMP::rmf)

WeightedSum (IMP::core)

ConnectingPairContainer (IMP::container)

GSLOptimizer (IMP::gsl)

OrderedTypeTripletPredicate (IMP::core)

SaveToConfigurationSetOptimizerState (IMP)

WeightedSumOfExponential (IMP::core)

ConnectivityCrossLinkMS (IMP.pmi.restraints.crosslinking)

H

OrientedSoap (IMP::score_functor)

SAXSISDRestraint (IMP.pmi.restraints.saxs)

WeightMover (IMP::isd)

ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

OrientedSoapPairScore (IMP::atom)

SAXSMultiStateModelScore (IMP::multi_state)

WeightRestraint (IMP.pmi.restraints.parameters)

ConnectivityRestraint (IMP.pmi.restraints.proteomics)

Harmonic (IMP::score_functor)

OrPDBSelector (IMP::atom)

SAXSRestraint (IMP.pmi.restraints.saxs)

WeightRestraint (IMP::isd)

ConnectivityRestraint (IMP.pmi.restraints.stereochemistry)

Harmonic (IMP::core)

Output (IMP.pmi.output)

Scale (IMP::isd)

WeightScore (IMP::score_functor)

ConnectivityRestraint (IMP::core)

HarmonicDistancePairScore (IMP::core)

OutputStatistics (IMP.pmi.output)

ScopedAddCacheAttribute (IMP)

WormLikeChain (IMP::misc)

ConnollySurfacePoint (IMP::algebra)

HarmonicLowerBound (IMP::score_functor)

P

ScopedSetAttribute (IMP)

WriteAssignmentContainer (IMP::domino)

ConsecutivePairContainer (IMP::container)

HarmonicLowerBound (IMP::core)

Score (IMP::score_functor)

WriteHDF5AssignmentContainer (IMP::domino)

ConsecutivePairFilter (IMP::container)

HarmonicSphereDistancePairScore (IMP::core)

PackedAssignmentContainer (IMP::domino)

ScoreAccumulator (IMP)

WriteOptimizerState (IMP::display)

ConstantPairPredicate (IMP::core)

HarmonicSpringSingletonScore (IMP::npctransport)

PairConstraint (IMP::core)

ScoreFunction (IMP::em2d)

WritePDBOptimizerState (IMP::atom)

ConstantQuadPredicate (IMP::core)

HarmonicSurfaceDepthPairScore (IMP::core)

PairContainer (IMP)

ScoreState (IMP)

Writer (IMP::display)

ConstantRestraint (IMP::core)

HarmonicSurfaceDistancePairScore (IMP::core)

PairContainerAdaptor (IMP)

ScoreUnaryFunction (IMP::score_functor)

WriterAdaptor (IMP::display)

ConstantSingletonPredicate (IMP::core)

HarmonicSurfaceHeightPairScore (IMP::core)

PairContainerSet (IMP::container)

Scoring (IMP::npctransport)

WriteRestraintScoresOptimizerState (IMP::core)

ConstantTripletPredicate (IMP::core)

HarmonicUpperBound (IMP::score_functor)

PairContainerStatistics (IMP::container)

ScoringFunction (IMP)

X

Constraint (IMP)

HarmonicUpperBound (IMP::core)

PairGeometry (IMP::display)

ScoringFunctionAdaptor (IMP)

ConstVector (IMP)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

PairListSubsetFilterTable (IMP::domino)

ScriptProvenance (IMP::core)

Xlink (IMP.EMageFit.buildxlinks)

ContactMapMetric (IMP::spb)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

PairModifier (IMP)

SecondaryStructure (IMP.pmi.restraints.stereochemistry)

XlinksDict (IMP.EMageFit.buildxlinks)

Container (IMP)

HarmonicWell (IMP::core)

PairPredicate (IMP)

SecondaryStructureResidue (IMP::atom)

XLTable (IMP.pmi.io.xltable)

Context (IMP.parallel)

HarmonicWellPairScore (IMP::npctransport)

PairRestraint (IMP::core)

Segment3D (IMP::algebra)

XorPDBSelector (IMP::atom)

Copy (IMP::atom)

HasHigherCCC (IMP::em2d)

PairsConstraint (IMP::container)

SegmentationParameters (IMP::em2d)

XplorReaderWriter (IMP::em)

Cosine (IMP::core)

HasLowerScore (IMP::em2d)

PairScore (IMP)

SegmentGeometry (IMP::display)

XYRadialPositionLowerRestraint (IMP::npc)

CoulombPairScore (IMP::atom)

HeapAssignmentContainer (IMP::domino)

PairsGeometry (IMP::display)

Segments (IMP.pmi.tools)

XYRadialPositionLowerRestraint (IMP.npc.npc_restraints)

Covariance1DFunction (IMP::isd)

HeapRecord (IMP.EMageFit.solutions_io)

PairsOptimizerState (IMP::container)

Selection (IMP::atom)

XYRadialPositionRestraint (IMP.npc.npc_restraints)

Cover (IMP::core)

HelixDecorator (IMP::spb)

PairsRestraint (IMP::container)

SelectionGeometry (IMP::atom)

XYRadialPositionRestraint (IMP::npc)

CoverBond (IMP::atom)

HelixRestraint (IMP.pmi.restraints.stereochemistry)

ParabolicFit2D (IMP::algebra)

Sequences (IMP.pmi.topology)

XYRadialPositionUpperRestraint (IMP.npc.npc_restraints)

CoverRefined (IMP::core)

HelixRestraint (IMP::atom)

Particle (IMP)

SerialMover (IMP::core)

XYRadialPositionUpperRestraint (IMP::npc)

CPDBSelector (IMP::atom)

HierarchiesGeometry (IMP::atom)

ParticleAdaptor (IMP)

SetCheckState (IMP)

XYZ (IMP::core)

CreateLogContext (IMP)

Hierarchy (IMP::core)

ParticleEmbedding (IMP::statistics)

SetLogState (IMP)

XYZDerivativeGeometry (IMP::core)

CrossCorrelationRestraint (IMP.pmi.restraints.em)

Hierarchy (IMP::atom)

ParticleFactory (IMP::npctransport)

SetLogTarget (IMP)

XYZDerivativesGeometry (IMP::core)

CrossLinkData (IMP::isd)

HierarchyCounter (IMP::core)

ParticleIndexAdaptor (IMP)

SetNumberOfThreads (IMP)

XYZR (IMP::core)

CrossLinkDataBaseFromStructure (IMP.pmi.io.crosslink)

HierarchyDatabase (IMP.pmi.tools)

ParticleIndexesAdaptor (IMP)

SettingsData (IMP::multifit)

XYZRGeometry (IMP::core)

CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink)

HierarchyGeometry (IMP::atom)

ParticleIndexPairsAdaptor (IMP)

SetupConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

XYZRsGeometry (IMP::core)

CrossLinkingMassSpectrometryRestraint (IMP.pmi.restraints.crosslinking)

HierarchyLoadLink (IMP::rmf)

ParticleInputs (IMP)

SetupMembraneRestraint (IMP.pmi.restraints.proteomics)

XYZStates (IMP::domino)

CrossLinkMS (IMP.pmi.nonmantained)

HierarchySaveLink (IMP::rmf)

ParticleOutputs (IMP)

SGEPESlaveArray (IMP.parallel)

Y

CrossLinkMSRestraint (IMP::isd)

HierarchyTraits (IMP::core)

ParticlesAdaptor (IMP::domino)

SGEQsubSlaveArray (IMP.parallel)

CrossLinkTable (IMP.pmi.analysis)

HierarchyVisitor (IMP::core)

ParticlesDummyRestraint (IMP::em2d)

Shift (IMP::score_functor)

YAxialPositionLowerRestraint (IMP.npc.npc_restraints)

CustomXYZR (IMP::misc)

HierarchyWithSitesLoadLink (IMP::npctransport)

ParticleStates (IMP::domino)

Showable (IMP)

YAxialPositionLowerRestraint (IMP::npc)

CvEstimator (IMP.isd.TuneRex)

HierarchyWithSitesSaveLink (IMP::npctransport)

ParticleStatesTable (IMP::domino)

SigmoidRestraintSphere (IMP::pmi)

YAxialPositionRestraint (IMP.npc.npc_restraints)

Cylinder3D (IMP::algebra)

HighDensityEmbedding (IMP::em)

ParticleTransportStatisticsOptimizerState (IMP::npctransport)

SimpleAssignmentsTable (IMP::domino)

YAxialPositionRestraint (IMP::npc)

CylinderGeometry (IMP::display)

HistogramD (IMP::statistics)

PartitionalClustering (IMP::statistics)

SimpleLoadLink (IMP::rmf)

YAxialPositionUpperRestraint (IMP.npc.npc_restraints)

CylinderRestraint (IMP.pmi.restraints.basic)

History (IMP.isd.History)

PartitionalClusteringWithCenter (IMP::statistics)

SimpleSaveLink (IMP::rmf)

YAxialPositionUpperRestraint (IMP::npc)

CysteineCrossLinkData (IMP::isd)

HybridMonteCarlo (IMP::isd)

PathLocalPlanner (IMP::kinematics)

Simplex (IMP::gsl)

Z

CysteineCrossLinkRestraint (IMP::isd)

HydrogenPDBSelector (IMP::atom)

PbcBoxedMover (IMP::spb)

SimulationData (IMP::npctransport)

D

I

PbcBoxedRigidBodyMover (IMP::spb)

Simulator (IMP::atom)

ZAxialPositionLowerRestraint (IMP::npc)

PCAAligner (IMP::em)

SingleLinkage (IMP::em2d)

ZAxialPositionLowerRestraint (IMP.npc.npc_restraints)

Database2 (IMP.EMageFit.database)

Image (IMP::em2d)

PCAFitRestraint (IMP::em)

SingletonConstraint (IMP::core)

ZAxialPositionRestraint (IMP::npc)

DataEntry (IMP.pmi.output)

ImageHeader (IMP::em)

PCAFitRestraint (IMP::em2d)

SingletonContainer (IMP)

ZAxialPositionRestraint (IMP.npc.npc_restraints)

DataObject (IMP::core)

ImageReaderWriter (IMP::em2d)

PDBSelector (IMP::atom)

SingletonContainerAdaptor (IMP)

ZAxialPositionUpperRestraint (IMP.npc.npc_restraints)

DataPointsAssignment (IMP::multifit)

IMPRestraints (IMP.modeller)

PDBSequences (IMP.pmi.topology)

SingletonContainerSet (IMP::container)

ZAxialPositionUpperRestraint (IMP::npc)

DecayPairContainerOptimizerState (IMP::misc)

ImproperSingletonScore (IMP::atom)

PerinuclearVolumeLocationRestraint (IMP::npc)

SingletonContainerStatistics (IMP::container)

ZBiasSingletonScore (IMP::npctransport)

Decorator (IMP)

InBoundingBox3DSingletonPredicate (IMP::core)

PermutationStates (IMP::domino)

SingletonGeometry (IMP::display)

p

DefaultEmbeddingD (IMP::algebra)

InContainerPairFilter (IMP::container)

Pipe (IMP.isd.utils)

SingletonModifier (IMP)

DegreesOfFreedom (IMP.pmi.dof)

InContainerQuadFilter (IMP::container)

PivyWriter (IMP::display)

SingletonPredicate (IMP)

piecewise_linear_distribution (IMP)

DeltaDistributionFunction (IMP::saxs)

InContainerSingletonFilter (IMP::container)

Plane3D (IMP::algebra)

SingletonRestraint (IMP::core)

s

Demuxer (IMP.isd.demux_trajs)

InContainerTripletFilter (IMP::container)

PlaneDihedralRestraint (IMP.pmi.restraints.stereochemistry)

SingletonsConstraint (IMP::container)

DenseFloatLogGridKD (IMP::algebra)

IncrementalScoringFunction (IMP::core)

PlaneGeometry (IMP::display)

SingletonScore (IMP)

sfo_common (IMP.isd.shared_functions)

DenseGrid3D (IMP::algebra)

Index (IMP)

PMIMoleculeHierarchy (IMP.pmi.topology)

SingletonsGeometry (IMP::display)

v

DenseGridStorageD (IMP::algebra)

IndexException (IMP)

Pointer (IMP)

SingletonsOptimizerState (IMP::container)

DenseIntLogGrid3D (IMP::algebra)

IndexStates (IMP::domino)

PointerMember (IMP)

SingletonsRestraint (IMP::container)

vonMises (IMP::isd)

DensityDataPoints (IMP::multifit)

IndexVector (IMP)

PointGeometry (IMP::display)

SingletonStatistical (IMP::score_functor)

vonMisesKappaConjugateRestraint (IMP::isd)

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