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IMP Reference Guide  2.9.0
The Integrative Modeling Platform
IMP.pmi.restraints.stereochemistry.ExcludedVolumeSphere Class Reference

A class to create an excluded volume restraint for a set of particles at a given resolution. More...

Inherits object.

Detailed Description

A class to create an excluded volume restraint for a set of particles at a given resolution.

Can be initialized as a bipartite restraint between two sets of particles.

Potential additional function: Variable resolution for each PMI object. Perhaps passing selection_tuples

with (PMI_object, resolution)

Note
This class is only available in Python.

Definition at line 169 of file stereochemistry.py.

Public Member Functions

def __init__
 Constructor. More...
 

Constructor & Destructor Documentation

def IMP.pmi.restraints.stereochemistry.ExcludedVolumeSphere.__init__ (   self,
  representation = None,
  included_objects = None,
  other_objects = None,
  resolution = 1000,
  kappa = 1.0 
)

Constructor.

Parameters
representationDEPRECATED - just pass objects
included_objectsCan be one of the following inputs: IMP Hierarchy, PMI System/State/Molecule/TempResidue, or a list/set of them
other_objectsInitializes a bipartite restraint between included_objects and other_objects Same format as included_objects
resolutionThe resolution particles at which to impose the restraint. By default, the coarsest particles will be chosen. If a number is chosen, for each particle, the closest resolution will be used (see IMP.atom.Selection).
kappaRestraint strength

Definition at line 181 of file stereochemistry.py.


The documentation for this class was generated from the following file: