Here is a list of all documented namespace members with links to the namespaces they belong to:
- g -
- gather()
: IMP::core
- gather_best_solution_results()
: IMP::EMageFit::solutions_io
- gather_by_attribute()
: IMP::core
- gather_by_attributes()
: IMP::core
- gather_slice()
: IMP::core
- gather_solution_results()
: IMP::EMageFit::solutions_io
- Gaussian3Ds
: IMP::algebra
- Geometries
: IMP::display
- GeometriesTemp
: IMP::display
- get_alignments_from_first_to_second()
: IMP::algebra
- get_all_atom_CHARMM_parameters()
: IMP::atom
- get_all_chains()
: IMP::EMageFit::imp_general::representation
- get_all_descendants()
: IMP::core
- get_all_leaves()
: IMP::pmi::tools
- get_all_members()
: IMP::EMageFit::imp_general::representation
- get_anchor_indices_matching_secondary_structure()
: IMP::multifit
- get_anchors_for_density()
: IMP::multifit
- get_angle()
: IMP::algebra
, IMP::core
- get_are_almost_equal()
: IMP::algebra
- get_are_colinear()
: IMP::algebra
- get_area()
: IMP::algebra
- get_assembly_placement_score()
: IMP::EMageFit::imp_general::comparisons
- get_atom()
: IMP::atom
- get_atom_type_exists()
: IMP::atom
- get_autocorrelation2d()
: IMP::em2d
- get_autocorrelation2d_no_preprocessing()
: IMP::em2d
- get_axis_and_angle()
: IMP::algebra
- get_backbone()
: IMP::EMageFit::imp_general::representation
- get_balanced_merge_tree()
: IMP::domino
- get_ball_radius_from_volume_3d()
: IMP::algebra
- get_basis_vector_d()
: IMP::algebra
- get_basis_vector_kd()
: IMP::algebra
- get_bead_sizes()
: IMP::pmi::io
- get_best_models()
: IMP::pmi::io
- get_best_solution()
: IMP::EMageFit::solutions_io
- get_best_template_matches()
: IMP::em2d
- get_bond()
: IMP::atom
- get_bool_flag()
: IMP
- get_bounding_box()
: IMP::algebra
, IMP::core
, IMP::em
- get_ccc()
: IMP::EMageFit::imp_general::comparisons
- get_centroid()
: IMP::algebra
, IMP::core
- get_centroids()
: IMP::statistics
- get_chain()
: IMP::atom
- get_chain_id()
: IMP::atom
- get_charmm_untyped_atoms()
: IMP::atom
- get_check_level()
: IMP
- get_close_to_point()
: IMP::multifit
- get_closer_power_of_2()
: IMP::algebra
- get_closest_residue_position()
: IMP::pmi::tools
- get_cn_rmsd()
: IMP::cnmultifit
- get_coarse_selection()
: IMP::EMageFit::imp_general::representation
- get_complete_alignment()
: IMP::em2d
- get_complete_alignment_no_preprocessing()
: IMP::em2d
- get_complete_alignment_with_centers_no_preprocessing()
: IMP::em2d
- get_component()
: IMP::EMageFit::imp_general::representation
- get_component_placement_score()
: IMP::atom
- get_components_placement_scores()
: IMP::EMageFit::imp_general::comparisons
- get_connected_components()
: IMP::multifit
- get_connectivity_restraint()
: IMP::EMageFit::restraints
- get_connolly_surface()
: IMP::algebra
- get_constrained()
: IMP::algebra
- get_constrained_surface_geometry()
: IMP::core
- get_coordinates()
: IMP::EMageFit::domino_model
- get_copy_index()
: IMP::atom
- get_correlation2d()
: IMP::em2d
- get_correlation2d_no_preprocessing()
: IMP::em2d
- get_covariance()
: IMP::algebra
- get_cross_correlation_coefficient()
: IMP::em2d
- get_cube_d()
: IMP::algebra
- get_cube_kd()
: IMP::algebra
- get_data_path()
: IMP::algebra
, IMP::atom
, IMP::benchmark
, IMP::cgal
, IMP::cnmultifit
, IMP::container
, IMP::core
, IMP::display
, IMP::domino
, IMP::em2d
, IMP::em
, IMP::EMageFit
, IMP::example
, IMP::foxs
, IMP
, IMP::gsl
, IMP::integrative_docking
, IMP::isd
, IMP::kinematics
, IMP::kmeans
, IMP::misc
, IMP::modeller
, IMP::mpi
, IMP::multi_state
, IMP::multifit
, IMP::parallel
, IMP::pepdock
, IMP::pmi
, IMP::rmf
, IMP::rotamer
, IMP::saxs
, IMP::saxs_merge
, IMP::score_functor
, IMP::scratch
, IMP::spb
, IMP::statistics
, IMP::symmetry
, IMP::test
- get_default_form_factor_table()
: IMP::saxs
- get_densities()
: IMP::pmi::tools
- get_dependency_graph()
: IMP
- get_dependent_particles()
: IMP
- get_deprecation_exceptions()
: IMP
- get_depth()
: IMP::core
- get_diffusion_angle()
: IMP::atom
- get_diffusion_coefficient()
: IMP::atom
- get_diffusion_filtering_partial_derivative()
: IMP::em2d
- get_diffusion_length()
: IMP::atom
- get_dihedral()
: IMP::core
- get_display_color()
: IMP::display
- get_distance()
: IMP::algebra
, IMP::core
, IMP::misc
- get_distance_if_smaller_than()
: IMP::domino
- get_domes()
: IMP::em2d
- get_drms()
: IMP::atom
- get_drms_for_backbone()
: IMP::EMageFit::imp_general::comparisons
- get_drmsd()
: IMP::atom
- get_drmsd_Q()
: IMP::atom
- get_edges()
: IMP::algebra
- get_einstein_diffusion_coefficient()
: IMP::atom
- get_einstein_rotational_diffusion_coefficient()
: IMP::atom
- get_elementwise_product()
: IMP::algebra
- get_em2d_restraint()
: IMP::EMageFit::restraints
- get_embedding()
: IMP::domino
- get_enclosing_image_size()
: IMP::em2d
- get_enclosing_sphere()
: IMP::algebra
, IMP::core
- get_evenly_distributed_registration_results()
: IMP::em2d
- get_example_path()
: IMP::algebra
, IMP::atom
, IMP::benchmark
, IMP::cgal
, IMP::cnmultifit
, IMP::container
, IMP::core
, IMP::display
, IMP::domino
, IMP::em2d
, IMP::em
, IMP::EMageFit
, IMP::example
, IMP::foxs
, IMP
, IMP::gsl
, IMP::integrative_docking
, IMP::isd
, IMP::kinematics
, IMP::kmeans
, IMP::misc
, IMP::modeller
, IMP::mpi
, IMP::multi_state
, IMP::multifit
, IMP::parallel
, IMP::pepdock
, IMP::pmi
, IMP::rmf
, IMP::rotamer
, IMP::saxs
, IMP::saxs_merge
, IMP::score_functor
, IMP::scratch
, IMP::spb
, IMP::statistics
, IMP::symmetry
, IMP::test
- get_executable_name()
: IMP
- get_experiment_params()
: IMP::EMageFit::utility
- get_fft_using_optimal_size()
: IMP::em2d
- get_fields_string()
: IMP::EMageFit::solutions_io
- get_fixed_xyz_from_rotation()
: IMP::algebra
- get_float_flag()
: IMP
- get_force_in_femto_newtons()
: IMP::atom
- get_gaussian_from_covariance()
: IMP::algebra
- get_global_score()
: IMP::em2d
- get_gnuplot_color()
: IMP::display
- get_gray_color()
: IMP::display
- get_grid()
: IMP::em
- get_grid_interior_cover_by_spacing()
: IMP::algebra
- get_grid_surface_cover()
: IMP::algebra
- get_heavy_atom_CHARMM_parameters()
: IMP::atom
- get_height()
: IMP::core
- get_hierarchy_tree()
: IMP::atom
- get_histogram()
: IMP::em2d
- get_hot_color()
: IMP::display
- get_identity_rotation_2d()
: IMP::algebra
- get_identity_rotation_3d()
: IMP::algebra
- get_identity_transformation_2d()
: IMP::algebra
- get_identity_transformation_3d()
: IMP::algebra
- get_index()
: IMP::domino
- get_indexes()
: IMP
- get_initial_reference_frame()
: IMP::core
- get_input_containers()
: IMP
- get_input_particles()
: IMP
- get_int_flag()
: IMP
- get_interaction_graph()
: IMP::domino
- get_interaction_graph_geometry()
: IMP::domino
- get_interiors_intersect()
: IMP::algebra
- get_internal()
: IMP::core
- get_interpolated()
: IMP::algebra
- get_interpolated_rgb()
: IMP::display
- get_intersection()
: IMP::algebra
- get_is_big_endian()
: IMP::algebra
- get_is_canonical()
: IMP::pmi
- get_is_little_endian()
: IMP::algebra
- get_is_quick_test()
: IMP
- get_jet_color()
: IMP::display
- get_junction_tree()
: IMP::domino
- get_kd()
: IMP::atom
- get_kt()
: IMP::atom
- get_largest_triangle()
: IMP::algebra
- get_leaves()
: IMP::atom
, IMP::core
- get_linear_color_map_value()
: IMP::display
- get_linearly_interpolated()
: IMP::algebra
- get_live_object_names()
: IMP
- get_live_objects()
: IMP
- get_log_level()
: IMP
- get_magnitude_and_normalize_in_place()
: IMP::algebra
- get_mass()
: IMP::atom
- get_mass_from_number_of_residues()
: IMP::atom
- get_mass_from_volume()
: IMP::atom
- get_max_map()
: IMP::em
- get_maximum_length()
: IMP::algebra
- get_maximum_time_step_estimate()
: IMP::atom
- get_mean()
: IMP::em2d
- get_merge_tree()
: IMP::domino
- get_molarity()
: IMP::atom
- get_molecular_mass_at_threshold()
: IMP::em
- get_molecule_name()
: IMP::atom
- get_molecule_name_and_copy()
: IMP::pmi
- get_molecules()
: IMP::pmi::tools
- get_morphologic_gradient()
: IMP::em2d
- get_native_overlap()
: IMP::atom
- get_nearest_assignment()
: IMP::domino
- get_networkx_graph()
: IMP
- get_next_larger_power_of_2()
: IMP::algebra
- get_next_residue()
: IMP::atom
- get_nucleic_acid_backbone()
: IMP::EMageFit::imp_general::representation
- get_number_of_incidences()
: IMP::example
- get_number_of_particles_outside_of_the_density()
: IMP::em
- get_number_of_threads()
: IMP
- get_numbers_of_particles_outside_of_the_density()
: IMP::em
- get_one_letter_code()
: IMP::atom
- get_ones_vector_d()
: IMP::algebra
- get_ones_vector_kd()
: IMP::algebra
- get_order()
: IMP::domino
- get_orientations_nearby()
: IMP::EMageFit::sampling
- get_orthogonal_vector()
: IMP::algebra
- get_output_containers()
: IMP
- get_output_particles()
: IMP
- get_overlap_percentage()
: IMP::em2d
- get_pairwise_rmsd_score()
: IMP::atom
- get_part_of_sampling_space()
: IMP::multifit
- get_partial_assembly_setting_data()
: IMP::multifit
- get_partial_index()
: IMP::domino
- get_particles()
: IMP
- get_particles_at_resolution_one()
: IMP::pmi::analysis
- get_particles_at_resolution_ten()
: IMP::pmi::analysis
- get_particles_from_points()
: IMP::EMageFit::imp_general::io
- get_particles_within_zone()
: IMP::pmi::tools
- get_percentage_of_voxels_covered_by_particles()
: IMP::em
- get_phi_dihedral_atoms()
: IMP::atom
- get_placement_score()
: IMP::atom
- get_placement_score_from_coordinates()
: IMP::EMageFit::imp_general::comparisons
- get_placement_scores_from_coordinates()
: IMP::EMageFit::imp_general::comparisons
- get_points_close_to_molecule()
: IMP::multifit
- get_possible_interactions()
: IMP::domino
- get_power_distance()
: IMP::algebra
- get_previous_residue()
: IMP::atom
- get_principal_components()
: IMP::algebra
- get_projected()
: IMP::algebra
- get_projection()
: IMP::em2d
- get_projections()
: IMP::em2d
- get_prot_name_from_particle()
: IMP::pmi::tools
- get_protein_density_from_reference()
: IMP::atom
- get_pruned_dependency_graph()
: IMP
- get_psi_dihedral_atoms()
: IMP::atom
- get_quantile()
: IMP::statistics
- get_radius_of_gyration()
: IMP::algebra
, IMP::atom
- get_random_chain()
: IMP::algebra
- get_random_cross_link_dataset()
: IMP::pmi::tools
- get_random_double_uniform()
: IMP
- get_random_float_uniform()
: IMP
- get_random_local_transformation()
: IMP::algebra
- get_random_numbers_normal()
: IMP
- get_random_numbers_uniform()
: IMP
- get_random_registration_results()
: IMP::em2d
- get_random_rotation_2d()
: IMP::algebra
- get_random_rotation_3d()
: IMP::algebra
- get_random_seed()
: IMP
- get_random_transformation()
: IMP::EMageFit::imp_general::movement
- get_random_vector_in()
: IMP::algebra
- get_random_vector_on()
: IMP::algebra
- get_random_vector_on_unit_sphere()
: IMP::algebra
- get_rasterized()
: IMP::algebra
- get_rasterized_fast()
: IMP::algebra
- get_rb_name()
: IMP::EMageFit::imp_general::representation
- get_rbs_and_beads()
: IMP::pmi::tools
- get_reference_frames_aligning_rbs()
: IMP::EMageFit::imp_general::alignments
- get_reference_frames_from_chain_alignment()
: IMP::EMageFit::imp_general::alignments
- get_reflected()
: IMP::algebra
- get_relative_path()
: IMP
- get_relative_projection_on_segment()
: IMP::algebra
- get_representation()
: IMP::atom
- get_representatives()
: IMP::statistics
- get_required_score_states()
: IMP
- get_residue()
: IMP::atom
- get_residue_coordinates()
: IMP::EMageFit::imp_general::representation
- get_residue_gaps_in_hierarchy()
: IMP::pmi::tools
- get_residue_indexes()
: IMP::pmi::tools
- get_residue_particle()
: IMP::EMageFit::imp_general::representation
- get_residue_type()
: IMP::atom
- get_residues_distance()
: IMP::EMageFit::imp_general::representation
- get_resolution()
: IMP::atom
- get_restraint_graph()
: IMP::domino
- get_restraint_set()
: IMP::pmi::tools
- get_restraints()
: IMP::domino
- get_rgb_color()
: IMP::display
- get_rigid_bodies_drms()
: IMP::atom
- get_rigid_body()
: IMP::EMageFit::imp_general::representation
- get_rmsd()
: IMP::algebra
, IMP::atom
- get_rmsd_transforming_first()
: IMP::algebra
, IMP::atom
- get_root()
: IMP::core
- get_root_rigid_body()
: IMP::core
- get_rotation_about_axis()
: IMP::algebra
- get_rotation_about_normalized_axis()
: IMP::algebra
- get_rotation_about_point()
: IMP::algebra
- get_rotation_error()
: IMP::em2d
- get_rotation_from_fixed_xyz()
: IMP::algebra
- get_rotation_from_fixed_zxz()
: IMP::algebra
- get_rotation_from_fixed_zyz()
: IMP::algebra
- get_rotation_from_matrix()
: IMP::algebra
- get_rotation_from_vector4d()
: IMP::algebra
- get_rotation_from_x_y_axes()
: IMP::algebra
- get_rotation_taking_first_to_second()
: IMP::algebra
- get_rotation_to_x_axis()
: IMP::algebra
- get_rotational_alignment()
: IMP::em2d
- get_rotational_alignment_no_preprocessing()
: IMP::em2d
- get_rotational_diffusion_coefficient()
: IMP::atom
- get_rounded()
: IMP::algebra
- get_secondary_structure_match_score()
: IMP::atom
- get_segment()
: IMP::em
- get_segment_by_masking()
: IMP::em
- get_segment_connecting_first_to_second()
: IMP::algebra
- get_segmentation()
: IMP::multifit
- get_selection_as_atom_hierarchy()
: IMP::EMageFit::imp_general::representation
- get_selection_rigid_body()
: IMP::EMageFit::imp_general::representation
- get_shift_error()
: IMP::em2d
- get_shortest_segment()
: IMP::algebra
- get_sign()
: IMP::algebra
- get_simplified_from_volume()
: IMP::algebra
- get_slack_estimate()
: IMP::container
- get_slice()
: IMP::domino
- get_sorted_segments()
: IMP::pmi::tools
- get_sorting_indices()
: IMP::EMageFit::database
, IMP::EMageFit::solutions_io
- get_spectrum()
: IMP::em2d
- get_sphere_d_geometry()
: IMP::misc
- get_spring_constant_in_femto_newtons_per_angstrom()
: IMP::atom
- get_squared_distance()
: IMP::algebra
- get_state_clusters()
: IMP::domino
- get_state_index()
: IMP::atom
- get_string_flag()
: IMP
- get_subset_graph_geometry()
: IMP::domino
- get_subsets()
: IMP::domino
- get_sum()
: IMP::em
- get_surface_area()
: IMP::algebra
, IMP::atom
- get_surface_area_and_volume()
: IMP::algebra
- get_terminal_residue()
: IMP::pmi::tools
- get_terminal_residue_position()
: IMP::pmi::tools
- get_threshold_for_approximate_mass()
: IMP::em
- get_threshold_for_approximate_volume()
: IMP::em
- get_threshold_map()
: IMP::em
- get_trajectory_models()
: IMP::pmi::io
- get_transformation_3d()
: IMP::algebra
- get_transformation_aligning_first_to_second()
: IMP::algebra
, IMP::core
- get_transformation_aligning_pair()
: IMP::algebra
- get_transformation_from_first_triangle_to_second()
: IMP::algebra
- get_transformed()
: IMP::algebra
, IMP::em2d
- get_translational_alignment()
: IMP::em2d
- get_translational_alignment_no_preprocessing()
: IMP::em2d
- get_trilinearly_interpolated()
: IMP::algebra
- get_uniform_cover_rotations_3d()
: IMP::algebra
- get_uniform_surface_cover()
: IMP::algebra
- get_uniform_upper_hemisphere_cover()
: IMP::algebra
- get_uniformly_sampled_rotations()
: IMP::algebra
- get_union()
: IMP::algebra
- get_unique_index()
: IMP::em2d
- get_unique_name()
: IMP
- get_unit_bounding_box_d()
: IMP::algebra
- get_unit_bounding_box_kd()
: IMP::algebra
- get_unit_vector()
: IMP::algebra
- get_update_order()
: IMP
- get_vector_geometry()
: IMP::algebra
, IMP::core
, IMP
- get_vector_product()
: IMP::algebra
- get_vertices()
: IMP::algebra
- get_volume()
: IMP::algebra
, IMP::atom
- get_volume_at_threshold()
: IMP::em
- get_volume_from_mass()
: IMP::atom
- get_volume_from_residue_type()
: IMP::atom
- get_weighted_rmsd()
: IMP::algebra
- get_zero_vector_d()
: IMP::algebra
- get_zero_vector_kd()
: IMP::algebra
- GetByType
: IMP::atom
- GLY
: IMP::atom
- GridStatesList
: IMP::em2d
- GridStatesListTemp
: IMP::em2d
- GSLOptimizers
: IMP::gsl
- GSLOptimizersTemp
: IMP::gsl