IMP Reference Guide
2.8.0
The Integrative Modeling Platform
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A method for merging SAXS profiles using Gaussian processes. More...
A method for merging SAXS profiles using Gaussian processes.
A method for merging SAXS profiles using Gaussian processes. Small-Angle X-ray Scattering (SAXS) is an experimental technique that allows gathering structural information on biomolecules in solution. High-quality SAXS profiles are usually obtained by manual merging of scattering profiles from different concentrations and exposure times.
SAXS Merge is a fully automated statistical method for merging SAXS profiles using Gaussian processes. This method requires only the buffer-subtracted profile files in a specific order. At the heart of its formulation is nonlinear interpolation using Gaussian Processes, which provide a statement of the problem that accounts for correlation in the data. The method is benchmarked.
A webserver is also available.
Examples:
Author(s): Yannick Spill, Seong Joong Kim, Dina Schneidman-Duhovny
Maintainer: yannickspill
License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
Publications:
Standard module functions | |
All | |
std::string | get_module_version () |
std::string | get_module_name () |
std::string | get_data_path (std::string file_name) |
Return the full path to one of this module's data files. More... | |
std::string | get_example_path (std::string file_name) |
Return the full path to one of this module's example files. More... | |
std::string IMP::saxs_merge::get_data_path | ( | std::string | file_name | ) |
Return the full path to one of this module's data files.
To read the data file "data_library" that was placed in the data
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.
std::string IMP::saxs_merge::get_example_path | ( | std::string | file_name | ) |
Return the full path to one of this module's example files.
To read the example file "example_protein.pdb" that was placed in the examples
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.