IMP Reference Guide
2.6.1
The Integrative Modeling Platform
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Set of python classes to create a multi-state, multi-resolution IMP hierarchy. More...
Set of python classes to create a multi-state, multi-resolution IMP hierarchy.
mdl = IMP.Model(); s = IMP.pmi.topology.System(mdl)
. The System will store all the states.Alternatively one can construct the entire topology and degrees of freedom via formatted text file with TopologyReader and IMP::pmi::macros::BuildSystem(). This is used in the PMI tutorial. Note that this only allows a limited set of the full options available to PMI users (rigid bodies only, fixed resolutions).
Classes | |
class | ComponentTopology |
Stores the components required to build a standard IMP hierarchy using IMP.pmi.BuildModel() More... | |
class | Molecule |
Stores a named protein chain. More... | |
class | Sequences |
A dictionary-like wrapper for reading and storing sequence data. More... | |
class | State |
Stores a list of Molecules all with the same State index. More... | |
class | System |
This class initializes the root node of the global IMP.atom.Hierarchy. More... | |
class | TempResidue |
Temporarily stores residue information, even without structure available. More... | |
class | TopologyReader |
Automatically setup Sytem and Degrees of Freedom with a formatted text file. More... | |