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IMP Reference Guide  2.6.1
The Integrative Modeling Platform
IMP.pmi.topology Namespace Reference

Set of python classes to create a multi-state, multi-resolution IMP hierarchy. More...

Detailed Description

Set of python classes to create a multi-state, multi-resolution IMP hierarchy.

Alternatively one can construct the entire topology and degrees of freedom via formatted text file with TopologyReader and IMP::pmi::macros::BuildSystem(). This is used in the PMI tutorial. Note that this only allows a limited set of the full options available to PMI users (rigid bodies only, fixed resolutions).

Classes

class  ComponentTopology
 Stores the components required to build a standard IMP hierarchy using IMP.pmi.BuildModel() More...
 
class  Molecule
 Stores a named protein chain. More...
 
class  Sequences
 A dictionary-like wrapper for reading and storing sequence data. More...
 
class  State
 Stores a list of Molecules all with the same State index. More...
 
class  System
 This class initializes the root node of the global IMP.atom.Hierarchy. More...
 
class  TempResidue
 Temporarily stores residue information, even without structure available. More...
 
class  TopologyReader
 Automatically setup Sytem and Degrees of Freedom with a formatted text file. More...