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IMP Reference Guide
2.6.1
The Integrative Modeling Platform
IMP Manual
Reference Guide
Modules
Classes
Examples
Class List
Class Index
Class Hierarchy
Class Members
All
Functions
Variables
Enumerations
Related Functions
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- c -
CAAngleRestraint() :
IMP::atom::CAAngleRestraint
CADihedralRestraint() :
IMP::atom::CADihedralRestraint
calc_all_voxel2loc() :
IMP::em::DensityMap
calc_score() :
IMP::em::CoarseCC
calc_symm_score() :
IMP::cnmultifit::MolCnSymmAxisDetector
calcRMS() :
IMP::em::DensityMap
calculate_derivative_distribution() :
IMP::saxs::DeltaDistributionFunction
calculate_I0() :
IMP::saxs::Profile
calculate_particles_bounding_box() :
IMP::em::SampledDensityMap
calculate_profile() :
IMP::saxs::Profile
calculate_profile_constant_form_factor() :
IMP::saxs::Profile
calculate_profile_partial() :
IMP::saxs::Profile
cap_velocity_component() :
IMP::atom::MolecularDynamics
CenteredMat() :
IMP::em2d::CenteredMat
CentroidOfRefined() :
IMP::core::CentroidOfRefined
ChainPDBSelector() :
IMP::atom::ChainPDBSelector
CHARMMParameters() :
IMP::atom::CHARMMParameters
CHARMMPatch() :
IMP::atom::CHARMMPatch
CHARMMResidueTopology() :
IMP::atom::CHARMMResidueTopology
CHARMMStereochemistryRestraint() :
IMP::atom::CHARMMStereochemistryRestraint
check_get_from() :
IMP.test.TestCase
check_if_is_connected() :
IMP.EMageFit.database.Database2
check_keys() :
IMP.pmi.io.crosslink.CrossLinkDataBaseKeywordsConverter
check_root() :
IMP.pmi.representation.Representation
check_runnable_python_module() :
IMP.test.TestCase
check_unary_function_deriv() :
IMP.test.TestCase
check_unary_function_min() :
IMP.test.TestCase
ChildrenRefiner() :
IMP::core::ChildrenRefiner
clear() :
IMP::container::DynamicListPairContainer
,
IMP::container::DynamicListQuadContainer
,
IMP::container::DynamicListSingletonContainer
,
IMP::container::DynamicListTripletContainer
,
IMP::container::ListPairContainer
,
IMP::container::ListQuadContainer
,
IMP::container::ListSingletonContainer
,
IMP::container::ListTripletContainer
,
IMP::em::ImageHeader
,
IMP::misc::LogPairScore
,
IMP::multifit::GeometricHash< T, D >
clear_caches() :
IMP::core::ExcludedVolumeRestraint
,
IMP::core::MinimumRestraint
,
IMP::Object
clear_data() :
IMP::kmeans::KMeans
clear_particle_caches() :
IMP::Model
clear_particle_pairs() :
IMP::container::DynamicListPairContainer
clear_particle_quads() :
IMP::container::DynamicListQuadContainer
clear_particle_triplets() :
IMP::container::DynamicListTripletContainer
clear_particles() :
IMP::container::DynamicListSingletonContainer
clear_range_cache() :
IMP::AttributeOptimizer
close() :
IMP.EMageFit.database.Database2
CloseBipartitePairContainer() :
IMP::container::CloseBipartitePairContainer
ClosedCubicSpline() :
IMP::core::ClosedCubicSpline
ClosePairContainer() :
IMP::container::ClosePairContainer
ClosePairsPairScore() :
IMP::core::ClosePairsPairScore
clustering() :
IMP.pmi.macros.AnalysisReplicaExchange0
ClusterSet() :
IMP::em2d::ClusterSet
coarse_hierarchy() :
IMP.pmi.representation.Representation
CollisionCrossSection() :
IMP::em2d::CollisionCrossSection
Color() :
IMP::display::Color
CompositeJoint() :
IMP::kinematics::CompositeJoint
CompositeRestraint() :
IMP::pmi::CompositeRestraint
compute_chisquare_derivative() :
IMP::saxs::DerivativeCalculator
compute_initial_scores() :
IMP::isd::GaussianEMRestraint
compute_offset() :
IMP::saxs::ProfileFitter< ScoringFunctionT >
compute_scale_factor() :
IMP::saxs::ProfileFitter< ScoringFunctionT >
compute_score() :
IMP::saxs::ProfileFitter< ScoringFunctionT >
,
IMP::saxs::WeightedProfileFitter< ScoringFunctionT >
compute_xyz_top() :
IMP::em::DensityHeader
Cone3D() :
IMP::algebra::Cone3D
Configuration() :
IMP::Configuration
ConfigurationSetRMSDMetric() :
IMP::statistics::ConfigurationSetRMSDMetric
ConfigurationSetXYZEmbedding() :
IMP::statistics::ConfigurationSetXYZEmbedding
connect() :
IMP.EMageFit.database.Database2
ConnectingPairContainer() :
IMP::container::ConnectingPairContainer
ConnectivityRestraint() :
IMP::core::ConnectivityRestraint
ConsecutivePairFilter() :
IMP::container::ConsecutivePairFilter
ConstantRestraint() :
IMP::core::ConstantRestraint
constrain_symmetry() :
IMP.pmi.dof.DegreesOfFreedom
convolution() :
IMP::em::CoarseConvolution
copy_map() :
IMP::em::DensityMap
Cosine() :
IMP::core::Cosine
CoverRefined() :
IMP::core::CoverRefined
create() :
IMP::em2d::ProjectionMask
,
IMP.EMageFit.database.Database2
,
IMP::rmf::SimpleLoadLink< O >
create_angles() :
IMP::atom::CHARMMParameters
create_clone() :
IMP::atom::Hierarchy
,
IMP::atom::Selection
,
IMP.pmi.topology.Molecule
create_clone_one() :
IMP::atom::Hierarchy
create_coarse_assembly() :
IMP.EMageFit.domino_model.DominoModel
create_components_from_rmf() :
IMP.pmi.representation.Representation
create_copy() :
IMP.pmi.topology.Molecule
create_current_decomposition() :
IMP::PairScore
,
IMP::QuadScore
,
IMP::Restraint
,
IMP::SingletonScore
,
IMP::TripletScore
create_decomposition() :
IMP::Restraint
create_density_map() :
IMP::em::DensityMap
create_dihedrals() :
IMP::atom::CHARMMParameters
create_entry() :
IMP.isd.Analysis.Analysis
create_flexible_beads() :
IMP.pmi.dof.DegreesOfFreedom
create_fragment() :
IMP::atom::Hierarchy
create_hierarchy() :
IMP::atom::CHARMMTopology
create_maps_for_resampling() :
IMP::em2d::PolarResamplingParameters
create_mask() :
IMP::em2d::MasksManager
create_masks() :
IMP::em2d::MasksManager
create_merge_tree() :
IMP.EMageFit.domino_model.DominoModel
create_molecule() :
IMP.pmi.topology.State
create_nuisance_mover() :
IMP.pmi.dof.DegreesOfFreedom
create_particles_in_box() :
IMP.test.TestCase
create_point_particle() :
IMP.test.TestCase
create_psi() :
IMP.pmi.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint
create_restraints() :
IMP::core::IncrementalScoringFunction
,
IMP::ScoringFunction
create_restraints_for_rmf() :
IMP.pmi.restraints.crosslinking.AtomicCrossLinkMSRestraint
create_rigid_body() :
IMP.pmi.dof.DegreesOfFreedom
create_scoring_function() :
IMP::Restraint
create_sigma() :
IMP.pmi.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint
create_state() :
IMP.pmi.topology.System
create_super_rigid_body() :
IMP.pmi.dof.DegreesOfFreedom
create_table() :
IMP.EMageFit.database.Database2
create_temperatures() :
IMP::mpi::ReplicaExchange
create_topology() :
IMP::atom::CHARMMParameters
create_view() :
IMP.EMageFit.database.Database2
CreateLogContext() :
IMP::CreateLogContext
cross_correlation_coefficient() :
IMP::em::CoarseCC
CrossLinkMSRestraint() :
IMP::isd::CrossLinkMSRestraint
CysteineCrossLinkRestraint() :
IMP::isd::CysteineCrossLinkRestraint