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IMP Manual
for IMP version 2.5.0
IMP Manual
Reference Guide
Related Pages
Other Versions
Related Pages
Here is a list of all related documentation pages:
[detail level
1
2
]
Applying IMP to a new biological system
Bug reports
Building
Runtime checks
Close pairs lists
CMake configuration options
Using command line tools
CNMultiFit: solution of symmetric complexes using a cryo-EM density map
Coding conventions
Contributing code back to IMP
Contributing to IMP
Conventions
Code coverage
Cross platform compatibility
Dependencies
Deprecation
Design of IMP
Design example
Developing the IMP source code
Developer setup
Directory structure
Documenting your code
Eigen
EMageFit: solution of a complex structure using subunit structures and EM class averages
Evaluation
Adding external dependencies
Frequently asked questions (FAQ)
FoXS: fitting structures against SAXS data
Good programming practices
IMP gotchas
Integrative docking: combining experimental data with computational pairwise docking
Building from source code on Windows
Installation
Internals
Introduction to integrative modeling
Conformational sampling: sampling antibody conformations using the rapidly exploring random tree (RRT) algorithm
Example of using the library
The IMP C++/Python library
Overview
Copyright and licenses
Logging
MultiFoXS: determination of multi-state models
MultiFit: solution of a complex structure using subunit structures and a cryo-EM density map
Writing new code
OpenMP
Parallelization
Profiling your code
Publications
RMF
Modeling of complexes using IMP::pmi
Stage 1 - Gathering of data
Stage 2 - Representation of subunits and translation of the data into spatial restraints
Stage 3 - Sampling
Stage 4 - Analysis Part 1
Stage 4 - Analysis Part 2
SAXSMerge: merging multiple SAXS profiles
Working with source control
git submodules and subtrees
Supporting your code
Exporting C++ code to Python
Debugging and testing your code
Units
Chimera tools and web services
Writing examples
Tools for developers
ChangeLog