IMP
2.3.1
The Integrative Modeling Platform
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- r -
R_factor_score() :
IMP::saxs::RadialDistributionFunction
RadialDistributionFunction() :
IMP::saxs::RadialDistributionFunction
radius_of_gyration() :
IMP::saxs::Profile
RadiusOfGyrationRestraint() :
IMP::multifit::RadiusOfGyrationRestraint
,
IMP::saxs::RadiusOfGyrationRestraint
randomize_particles() :
IMP.test.TestCase
read() :
IMP::em2d::Image
,
IMP::em2d::RegistrationResult
,
IMP::em::EMReaderWriter
,
IMP::em::ImageHeader
,
IMP::em::MRCReaderWriter
,
IMP::em::SpiderMapReaderWriter
,
IMP.isd.TALOSReader.TALOSReader
read_AMBER_stats() :
IMP.isd.Analysis.Analysis
read_AMBER_variables() :
IMP.isd.Analysis.Analysis
read_data() :
IMP::em::EMReaderWriter
read_from_floats() :
IMP::em2d::SpiderImageReaderWriter
read_from_image() :
IMP::em2d::RegistrationResult
read_from_ints() :
IMP::em2d::JPGImageReaderWriter
,
IMP::em2d::TIFFImageReaderWriter
read_header() :
IMP::em::EMReaderWriter
read_library_file() :
IMP::rotamer::RotamerLibrary
read_merge_tree() :
IMP.em2d.DominoModel.DominoModel
read_partial_profiles() :
IMP::saxs::Profile
read_SAXS_file() :
IMP::saxs::Profile
read_shell_commands() :
IMP.test.ApplicationTestCase
read_stats() :
IMP.isd.Analysis.Analysis
read_variables() :
IMP.isd.Analysis.Analysis
ReferenceFrame3D() :
IMP::algebra::ReferenceFrame3D
RefinedPairsPairScore() :
IMP::core::RefinedPairsPairScore
Refiner() :
IMP::kernel::Refiner
reject() :
IMP::core::MonteCarloMover
release() :
IMP::base::Pointer< O >
,
IMP::base::PointerMember< O >
remove() :
IMP::base::SparseSymmetricPairMemoizer< Generator, Checker >
remove_atom() :
IMP::atom::CHARMMIdealResidueTopology
remove_attribute() :
IMP::kernel::Model
remove_data() :
IMP::kernel::Model
remove_floppy_bodies() :
IMP.pmi.dof.dof
remove_particle() :
IMP::core::TableRefiner
,
IMP::kernel::Model
remove_rigid_motion() :
IMP::atom::RemoveRigidMotionOptimizerState
remove_translation() :
IMP::atom::RemoveTranslationOptimizerState
resample() :
IMP::em::SampledDensityMap
,
IMP::em::SurfaceShellDensityMap
,
IMP::saxs::Profile
,
IMP::saxs::ProfileFitter< ScoringFunctionT >
rescale_velocities() :
IMP::atom::BerendsenThermostatOptimizerState
,
IMP::atom::LangevinThermostatOptimizerState
,
IMP::atom::VelocityScalingOptimizerState
,
IMP.isd.shared_functions.sfo_common
reset() :
IMP::base::CreateLogContext
,
IMP::base::SetCheckState
,
IMP::base::SetLogState
,
IMP::base::SetLogTarget
,
IMP::base::SetNumberOfThreads
,
IMP::benchmark::Profiler
,
IMP::kernel::OptimizerState
,
IMP::kernel::ScopedAddCacheAttribute< Key, Value >
,
IMP::kernel::ScopedSetAttribute< Key, Value >
reset_data() :
IMP::em::DensityMap
reset_moved_particles() :
IMP::core::IncrementalScoringFunction
reset_stats() :
IMP::core::RigidBodyTunneler
Restraint() :
IMP::kernel::Restraint
,
IMP::saxs::Restraint
RestraintScoreSubsetFilterTable() :
IMP::domino::RestraintScoreSubsetFilterTable
RestraintSet() :
IMP::kernel::RestraintSet
retrieve_data() :
IMP.em2d.Database.Database2
RevoluteJoint() :
IMP::kinematics::RevoluteJoint
RigidBodiesImageFitRestraint() :
IMP::em2d::RigidBodiesImageFitRestraint
RigidBodyDistancePairScore() :
IMP::core::RigidBodyDistancePairScore
RigidBodyMover() :
IMP::symmetry::RigidBodyMover
RigidBodyTunneler() :
IMP::core::RigidBodyTunneler
RigidBodyUmbrella() :
IMP::core::RigidBodyUmbrella
RotamerAngleTuple() :
IMP::rotamer::RotamerAngleTuple
RotamerCalculator() :
IMP::rotamer::RotamerCalculator
RotamerLibrary() :
IMP::rotamer::RotamerLibrary
Rotation2D() :
IMP::algebra::Rotation2D
Rotation3D() :
IMP::algebra::Rotation3D
run_application() :
IMP.test.ApplicationTestCase
run_example() :
IMP.test.TestCase
run_monte_carlo() :
IMP.em2d.MonteCarloRelativeMoves.MonteCarloRelativeMoves
run_monte_carlo_with_relative_movers() :
IMP.em2d.MonteCarloRelativeMoves.MonteCarloRelativeMoves
run_python_application() :
IMP.test.ApplicationTestCase
run_python_module() :
IMP.test.TestCase
run_script() :
IMP.test.ApplicationTestCase
run_shell_command() :
IMP.test.ApplicationTestCase