IMP
2.3.1
The Integrative Modeling Platform
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Em2DRestraint() :
IMP::em2d::Em2DRestraint
EnvelopeFitRestraint() :
IMP::em::EnvelopeFitRestraint
EnvelopePenetrationRestraint() :
IMP::em::EnvelopePenetrationRestraint
estimate_cv_constant() :
IMP.isd.TuneRex.CvEstimator
estimate_cv_interpolate() :
IMP.isd.TuneRex.CvEstimator
estimate_cv_mbar() :
IMP.isd.TuneRex.CvEstimator
evaluate() :
IMP::core::ClosedCubicSpline
,
IMP::core::Cosine
,
IMP::core::Harmonic
,
IMP::core::HarmonicLowerBound
,
IMP::core::HarmonicUpperBound
,
IMP::core::HarmonicWell
,
IMP::core::Linear
,
IMP::core::TruncatedHarmonic< DIRECTION >
,
IMP::em::CoarseCCatIntervals
,
IMP::example::ExampleUnaryFunction
,
IMP::kernel::Model
,
IMP::kernel::PairScore
,
IMP::kernel::QuadScore
,
IMP::kernel::ScoringFunction
,
IMP::kernel::SingletonScore
,
IMP::kernel::TripletScore
,
IMP::kernel::UnaryFunction
,
IMP::misc::WormLikeChain
,
IMP::score_functor::ScoreUnaryFunction< Score, D >
evaluate_for_contributions() :
IMP::isd::AtomicCrossLinkMSRestraint
evaluate_if_good_index() :
IMP::core::ClosePairsPairScore
,
IMP::core::KClosePairsPairScore
,
IMP::kernel::PairScore
,
IMP::kernel::QuadScore
,
IMP::kernel::SingletonScore
,
IMP::kernel::TripletScore
evaluate_if_good_indexes() :
IMP::atom::AngleSingletonScore
,
IMP::atom::BondSingletonScore
,
IMP::atom::CoulombPairScore
,
IMP::atom::DihedralSingletonScore
,
IMP::atom::ImproperSingletonScore
,
IMP::atom::LennardJonesPairScore
,
IMP::container::MinimumPairScore
,
IMP::container::MinimumQuadScore
,
IMP::container::MinimumSingletonScore
,
IMP::container::MinimumTripletScore
,
IMP::core::AngleTripletScore
,
IMP::core::ClosePairsPairScore
,
IMP::core::GenericAttributeSingletonScore< UF >
,
IMP::core::GenericBoundingBox3DSingletonScore< UF >
,
IMP::core::GenericDistanceToSingletonScore< UF >
,
IMP::core::HarmonicUpperBoundSphereDiameterPairScore
,
IMP::core::KClosePairsPairScore
,
IMP::core::NormalizedSphereDistancePairScore
,
IMP::core::PredicateSingletonScore< Predicate, Score >
,
IMP::core::RefinedPairsPairScore
,
IMP::core::SphereDistanceToSingletonScore
,
IMP::core::TransformedDistancePairScore
,
IMP::core::TypedPairScore
,
IMP::core::WeightedSphereDistancePairScore
,
IMP::example::ExamplePairScore
,
IMP::isd::RepulsiveDistancePairScore
,
IMP::kernel::PairScore
,
IMP::kernel::QuadScore
,
IMP::kernel::SingletonScore
,
IMP::kernel::TripletScore
,
IMP::misc::LowestRefinedPairScore
,
IMP::misc::SoftCylinderPairScore
,
IMP::score_functor::DistancePairScore< DistanceScoreT >
evaluate_index() :
IMP::atom::AngleSingletonScore
,
IMP::atom::BondSingletonScore
,
IMP::atom::CoulombPairScore
,
IMP::atom::DihedralSingletonScore
,
IMP::atom::ImproperSingletonScore
,
IMP::atom::LennardJonesPairScore
,
IMP::container::MinimumPairScore
,
IMP::container::MinimumQuadScore
,
IMP::container::MinimumSingletonScore
,
IMP::container::MinimumTripletScore
,
IMP::core::AngleTripletScore
,
IMP::core::ClosePairsPairScore
,
IMP::core::DistancePairScore
,
IMP::core::GenericAttributeSingletonScore< UF >
,
IMP::core::GenericBoundingBox3DSingletonScore< UF >
,
IMP::core::GenericDistanceToSingletonScore< UF >
,
IMP::core::HarmonicDistancePairScore
,
IMP::core::HarmonicSphereDistancePairScore
,
IMP::core::HarmonicUpperBoundSphereDiameterPairScore
,
IMP::core::HarmonicUpperBoundSphereDistancePairScore
,
IMP::core::KClosePairsPairScore
,
IMP::core::NormalizedSphereDistancePairScore
,
IMP::core::PredicateSingletonScore< Predicate, Score >
,
IMP::core::RefinedPairsPairScore
,
IMP::core::SoftSpherePairScore
,
IMP::core::SphereDistancePairScore
,
IMP::core::SphereDistanceToSingletonScore
,
IMP::core::TransformedDistancePairScore
,
IMP::core::TypedPairScore
,
IMP::core::WeightedSphereDistancePairScore
,
IMP::example::ExamplePairScore
,
IMP::isd::RepulsiveDistancePairScore
,
IMP::kernel::PairScore
,
IMP::kernel::QuadScore
,
IMP::kernel::SingletonScore
,
IMP::kernel::TripletScore
,
IMP::misc::LogPairScore
,
IMP::misc::LowestRefinedPairScore
,
IMP::misc::SoftCylinderPairScore
,
IMP::score_functor::DistancePairScore< DistanceScoreT >
evaluate_indexes() :
IMP::atom::AngleSingletonScore
,
IMP::atom::BondSingletonScore
,
IMP::atom::CoulombPairScore
,
IMP::atom::DihedralSingletonScore
,
IMP::atom::ImproperSingletonScore
,
IMP::atom::LennardJonesPairScore
,
IMP::container::MinimumPairScore
,
IMP::container::MinimumQuadScore
,
IMP::container::MinimumSingletonScore
,
IMP::container::MinimumTripletScore
,
IMP::core::AngleTripletScore
,
IMP::core::ClosePairsPairScore
,
IMP::core::GenericAttributeSingletonScore< UF >
,
IMP::core::GenericBoundingBox3DSingletonScore< UF >
,
IMP::core::GenericDistanceToSingletonScore< UF >
,
IMP::core::HarmonicUpperBoundSphereDiameterPairScore
,
IMP::core::KClosePairsPairScore
,
IMP::core::NormalizedSphereDistancePairScore
,
IMP::core::PredicateSingletonScore< Predicate, Score >
,
IMP::core::RefinedPairsPairScore
,
IMP::core::SphereDistanceToSingletonScore
,
IMP::core::TransformedDistancePairScore
,
IMP::core::TypedPairScore
,
IMP::core::WeightedSphereDistancePairScore
,
IMP::example::ExamplePairScore
,
IMP::isd::RepulsiveDistancePairScore
,
IMP::kernel::PairScore
,
IMP::kernel::QuadScore
,
IMP::kernel::SingletonScore
,
IMP::kernel::TripletScore
,
IMP::misc::LowestRefinedPairScore
,
IMP::misc::SoftCylinderPairScore
,
IMP::score_functor::DistancePairScore< DistanceScoreT >
evaluate_with_derivative() :
IMP::core::ClosedCubicSpline
,
IMP::core::Cosine
,
IMP::core::Harmonic
,
IMP::core::HarmonicLowerBound
,
IMP::core::HarmonicUpperBound
,
IMP::core::HarmonicWell
,
IMP::core::Linear
,
IMP::core::TruncatedHarmonic< DIRECTION >
,
IMP::example::ExampleUnaryFunction
,
IMP::kernel::UnaryFunction
,
IMP::misc::WormLikeChain
,
IMP::score_functor::ScoreUnaryFunction< Score, D >
EventException() :
IMP::base::EventException
ExampleComplexRestraint() :
IMP::example::ExampleComplexRestraint
ExampleRestraint() :
IMP::example::ExampleRestraint
ExampleTemplateClassD() :
IMP::example::ExampleTemplateClassD< D >
ExampleUnaryFunction() :
IMP::example::ExampleUnaryFunction
ExcludedVolumeRestraint() :
IMP::core::ExcludedVolumeRestraint
ExclusiveConsecutivePairContainer() :
IMP::container::ExclusiveConsecutivePairContainer
execute() :
IMP::kmeans::KMeans
ExtendedGridIndexD() :
IMP::algebra::ExtendedGridIndexD< D >