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CoverBond.h
Go to the documentation of this file.
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/**
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* \file IMP/atom/CoverBond.h
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* \brief Cover a bond with a sphere
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*
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* Copyright 2007-2014 IMP Inventors. All rights reserved.
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*/
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#ifndef IMPATOM_COVER_BOND_H
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#define IMPATOM_COVER_BOND_H
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#include <IMP/atom/atom_config.h>
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#include <
IMP/PairContainer.h
>
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#include <
IMP/SingletonContainer.h
>
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#include <
IMP/SingletonModifier.h
>
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#include <
IMP/singleton_macros.h
>
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IMPATOM_BEGIN_NAMESPACE
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//! Cover a bond with a sphere
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/** This is a version of core::CoverRefined optimized for bonds. It is
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about 4x faster than the general purpose one.
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*/
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class
IMPATOMEXPORT
CoverBond
:
public
SingletonModifier
{
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public
:
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CoverBond
();
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virtual
void
apply_index
(
kernel::Model
*m,
kernel::ParticleIndex
p)
const
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IMP_OVERRIDE
;
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virtual
kernel::ModelObjectsTemp
do_get_inputs
(
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kernel::Model
*m,
const
kernel::ParticleIndexes
&pis)
const
IMP_OVERRIDE
;
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virtual
kernel::ModelObjectsTemp
do_get_outputs
(
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kernel::Model
*m,
const
kernel::ParticleIndexes
&pis)
const
IMP_OVERRIDE
;
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IMP_SINGLETON_MODIFIER_METHODS
(
CoverBond
);
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IMP_OBJECT_METHODS
(
CoverBond
);
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;
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};
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IMP_OBJECTS
(
CoverBond
,
CoverBonds
);
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IMPATOM_END_NAMESPACE
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#endif
/* IMPATOM_COVER_BOND_H */
SingletonModifier.h
Import IMP/kernel/SingletonModifier.h in the namespace.
SingletonContainer.h
Import IMP/kernel/SingletonContainer.h in the namespace.
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
singleton_macros.h
Import IMP/kernel/singleton_macros.h in the namespace.
IMP::base::Vector
Definition:
Vector.h:37
IMP::kernel::SingletonModifier::apply_index
virtual void apply_index(kernel::Model *m, kernel::ParticleIndex v) const
IMP::kernel::SingletonModifier
A base class for modifiers of kernel::ParticlesTemp.
Definition:
kernel/SingletonModifier.h:33
PairContainer.h
Import IMP/kernel/PairContainer.h in the namespace.
IMP::kernel::ParticleInputs::do_get_inputs
virtual ModelObjectsTemp do_get_inputs(kernel::Model *m, const ParticleIndexes &pis) const
IMP::base::Index< ParticleIndexTag >
IMP_OBJECTS
#define IMP_OBJECTS(Name, PluralName)
Define the types for storing sets of objects.
Definition:
object_macros.h:52
IMP::kernel::ParticleOutputs::do_get_outputs
virtual ModelObjectsTemp do_get_outputs(kernel::Model *m, const ParticleIndexes &pis) const
IMP::atom::CoverBond
Cover a bond with a sphere.
Definition:
CoverBond.h:24
IMP_SINGLETON_MODIFIER_METHODS
#define IMP_SINGLETON_MODIFIER_METHODS(Name)
Definition:
kernel/singleton_macros.h:92
IMP_OVERRIDE
#define IMP_OVERRIDE
Cause a compile error if this method does not override a parent method.
Definition:
compiler_macros.h:75
IMP::kernel::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
kernel/Model.h:73