IMP::score_functor Namespace Reference

Composable functors to implement scores via compile-time composition. More...

Detailed Description

Composable functors to implement scores via compile-time composition.

Currently, there is support for distance based IMP::PairScore types generated from the IMP::score_functor::DistanceScore and IMP::score_functor::DistancePairScore. Angles and others can be added if desired.

No functionality is exported to Python. It can be done with some work, but it is not clear that it would be very useful.

Info

Author(s): Daniel Russel

Maintainer: benmwebb

License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

Publications:

• See main IMP papers list.

Classes
class	AddScores
class	DistancePairScore
	Create efficient distance-based pair scores. More...
class	DistancePairScoreWithCache
	Create efficient distance-based pair scores, with cache. More...
class	Dope
	Score pair of atoms based on DOPE. More...
class	Harmonic
class	HarmonicLowerBound
class	HarmonicUpperBound
class	LinearLowerBound
class	LoopStatistical
	Score atoms based on the Fiser/Melo loop modeling statistical potential. More...
class	OpenCubicSpline
	Open cubic spline function. More...
class	OrientedSoap
	Orientation-dependent SOAP score. More...
class	PointToSphereDistance
struct	Score
	A functor for computing a distance based score for D particles. More...
class	ScoreUnaryFunction
struct	ScoreWithCache
	A cached functor for computing a distance based score for D particles. More...
class	Shift
class	SingletonStatistical
	Create a single key/single particle statistical potential from a file. More...
class	Soap
	Score pairs of atoms based on SOAP. More...
class	SphereDistance
class	Statistical
class	SurfaceDepthPairScore
	Create efficient surface depth-based pair scores. More...
class	SurfaceDistancePairScore
	Create efficient surface distance-based pair scores. More...
class	SurfaceHeightPairScore
	Create efficient surface height-based pair scores. More...
class	UnaryFunctionEvaluate
class	WeightScore

Typedefs
typedef Key< 6453462 >	DopeType
	The type of atoms for Dope. More...
typedef IMP::Vector< DopeType >	DopeTypes
typedef Key< 6453472 >	LoopStatisticalType
typedef IMP::Vector < LoopStatisticalType >	LoopStatisticalTypes

Standard module functions
All IMP modules have a set of standard functions to help get information about the module and about files associated with the module.
std::string	get_module_version ()
	Return the version of this module, as a string. More...
std::string	get_module_name ()
std::string	get_data_path (std::string file_name)
	Return the full path to one of this module's data files. More...
std::string	get_example_path (std::string file_name)
	Return the full path to one of this module's example files. More...

Typedef Documentation

typedef Key<6453462> IMP::score_functor::DopeType

The type of atoms for Dope.

Definition at line 21 of file Dope.h.

typedef IMP::Vector< DopeType > IMP::score_functor::DopeTypes

Pass or store a set of DopeType .

Definition at line 22 of file Dope.h.

typedef Key<6453472> IMP::score_functor::LoopStatisticalType

The type of atoms for the loop modeling potential.

Definition at line 21 of file LoopStatistical.h.

typedef IMP::Vector< LoopStatisticalType > IMP::score_functor::LoopStatisticalTypes

Pass or store a set of LoopStatisticalType .

Definition at line 22 of file LoopStatistical.h.

Function Documentation

std::string IMP::score_functor::get_data_path

(

std::string

file_name

)

Return the full path to one of this module's data files.

To read the data file "data_library" that was placed in the data directory of this module, do something like

std::ifstream in(IMP::score_functor::get_data_path("data_library"));

This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh script.

Note

Each module has its own data directory, so be sure to use this function from the correct module.

std::string IMP::score_functor::get_example_path

(

std::string

file_name

)

Return the full path to one of this module's example files.

To read the example file "example_protein.pdb" that was placed in the examples directory of this module, do something like

std::ifstream in(IMP::score_functor::get_example_path("example_protein.pdb"));

This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh script.

Note

Each module has its own example directory, so be sure to use this function from the correct module.

std::string IMP::score_functor::get_module_version

(

)

Return the version of this module, as a string.

Note

This function is only available in Python.

Definition at line 5 of file EMageFit/__init__.py.