IMP Reference Guide
2.22.0
The Integrative Modeling Platform
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Interface to the Modeller comparative modeling package. More...
Interface to the Modeller comparative modeling package.
Functionality includes:
If you want to use IMP with MODELLER, you should use version 9v7 or later. If you installed the MODELLER Linux RPM or Mac package, it should be detected automatically. Make sure that MODELLER is found in your PYTHONPATH
.
Author(s): Ben Webb, Daniel Russel
Maintainer: benmwebb
License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
Publications:
Classes | |
class | IMPRestraints |
A Modeller restraint which evaluates an IMP scoring function. More... | |
class | ModellerRestraints |
An IMP restraint using all defined Modeller restraints. More... | |
class | ModelLoader |
Read a Modeller model into IMP. More... | |
Functions | |
def | add_soft_sphere_radii |
Add radii to the hierarchy using the Modeller radius library, radii.lib. More... | |
def | get_data_path |
Return the full path to one of this module's data files. More... | |
def | get_example_path |
Return the full path to one of this module's example files. More... | |
def | get_module_name |
Return the fully-qualified name of this module. More... | |
def | get_module_version |
Return the version of this module, as a string. More... | |
def IMP.modeller.add_soft_sphere_radii | ( | hierarchy, | |
submodel, | |||
scale = 1.0 , |
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filename = None |
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) |
Add radii to the hierarchy using the Modeller radius library, radii.lib.
Each radius is scaled by the given scale (Modeller usually scales radii by a factor of 0.82). submodel specifies the topology submodel, which is the column in radii.lib to use.
Definition at line 351 of file modeller/__init__.py.
def IMP.modeller.get_data_path | ( | fname | ) |
Return the full path to one of this module's data files.
Definition at line 631 of file modeller/__init__.py.
def IMP.modeller.get_example_path | ( | fname | ) |
Return the full path to one of this module's example files.
Definition at line 636 of file modeller/__init__.py.
def IMP.modeller.get_module_name | ( | ) |
Return the fully-qualified name of this module.
Definition at line 626 of file modeller/__init__.py.
def IMP.modeller.get_module_version | ( | ) |
Return the version of this module, as a string.
Definition at line 621 of file modeller/__init__.py.