IMP.isd.utils Namespace Reference

Miscellaneous utilities. More...

Detailed Description

Miscellaneous utilities.

Classes
class	Pipe
	implements a FIFO pipe that merges lists (see self.put) More...

Functions
def	check_residue
	checks whether residue codes a and b are the same, doing necessary conversions More...
def	map_angles
	maps angles into interval [-pi,pi] More...
def	read_sequence_file
	read sequence of ONE chain, 1-letter or 3-letter, returns dict of no:3-letter code. More...

Function Documentation

def IMP.isd.utils.check_residue	(		a,
			b
	)

checks whether residue codes a and b are the same, doing necessary conversions

Note

This function is only available in Python.

Definition at line 308 of file utils.py.

def IMP.isd.utils.map_angles	(		angles,
			period = None
	)

maps angles into interval [-pi,pi]

Note

This function is only available in Python.

Definition at line 523 of file utils.py.

def IMP.isd.utils.read_sequence_file	(		filename,
			first_residue_number = 1
	)

read sequence of ONE chain, 1-letter or 3-letter, returns dict of no:3-letter code.

Fails on unknown amino acids.

Note

This function is only available in Python.

Definition at line 275 of file utils.py.