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IMP Reference Guide
2.22.0
The Integrative Modeling Platform
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Creates a restraint between the termini two polypeptides, to simulate the sequence connectivity. More...
Creates a restraint between the termini two polypeptides, to simulate the sequence connectivity.
Definition at line 827 of file stereochemistry.py.
Public Member Functions | |
| def | __init__ |
| def IMP.pmi.restraints.stereochemistry.FusionRestraint.__init__ | ( | self, | |
| nterminal, | |||
| cterminal, | |||
scale = 1.0, |
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disorderedlength = False, |
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upperharmonic = True, |
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resolution = 1, |
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label = 'None' |
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| ) |
| nterminal | - single PMI2 Hierarchy/molecule at the nterminal |
| cterminal | - single PMI2 Hierarchy/molecule at the cterminal |
| scale | Scale the maximal distance between the beads by this factor when disorderedlength is False. The maximal distance is calculated as ((float(residuegap) + 1.0) * 3.6) * scale. |
| disorderedlength | - This flag uses either disordered length calculated for random coil peptides (True) or zero surface-to-surface distance between beads (False) as optimal distance for the sequence connectivity restraint. |
| upperharmonic | - This flag uses either harmonic (False) or upperharmonic (True) in the intra-pair connectivity restraint. |
| resolution | - The resolution to connect things at - only used if you pass PMI objects |
| label | - A string to identify this restraint in the output/stat file |
Definition at line 846 of file stereochemistry.py.