Detailed Description

Joint that is parameterized as a bond angle between three particles.

Definition at line 243 of file revolute_joints.h.

Public Member Functions
	BondAngleRevoluteJoint (IMP::core::RigidBody parent, IMP::core::RigidBody child, IMP::core::XYZ a, IMP::core::XYZ b, IMP::core::XYZ c)

Public Member Functions inherited from IMP::kinematics::RevoluteJoint
	RevoluteJoint (IMP::core::RigidBody parent, IMP::core::RigidBody child)
	Construct on the line connecting a and b, with an initial angle 'angle'. More...

double	get_angle () const

void	set_angle (double angle)

Public Member Functions inherited from IMP::kinematics::Joint
	Joint (IMP::core::RigidBody parent, IMP::core::RigidBody child)
	Constructor. More...

IMP::core::RigidBody	get_child_node () const

KinematicForest *	get_owner_kf () const

IMP::core::RigidBody	get_parent_node () const

virtual const IMP::algebra::Transformation3D &	get_transformation_child_to_parent () const

virtual std::string	get_type_name () const override

virtual ::IMP::VersionInfo	get_version_info () const override
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Protected Member Functions
virtual double	get_current_angle_from_cartesian_witnesses () const override

virtual void	update_axis_of_rotation_from_cartesian_witnesses () override

Protected Member Functions inherited from IMP::kinematics::RevoluteJoint
const IMP::algebra::Vector3D &	get_rot_axis_origin () const

const IMP::algebra::Vector3D &	get_rot_axis_unit_vector () const

IMP::algebra::Transformation3D	get_rotation_about_joint_in_parent_coordinates () const

virtual void	update_child_node_reference_frame () const override

virtual void	update_joint_from_cartesian_witnesses () override

Protected Member Functions inherited from IMP::kinematics::Joint
virtual const IMP::algebra::Transformation3D &	get_transformation_child_to_parent_no_checks () const

void	set_owner_kf (KinematicForest *kf)

void	set_transformation_child_to_parent_no_checks (IMP::algebra::Transformation3D transformation)

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Additional Inherited Members
Protected Attributes inherited from IMP::kinematics::RevoluteJoint
double	angle_

double	last_updated_angle_

IMP::algebra::Vector3D	rot_axis_origin_

IMP::algebra::Vector3D	rot_axis_unit_vector_

Constructor & Destructor Documentation

IMP::kinematics::BondAngleRevoluteJoint::BondAngleRevoluteJoint	(	IMP::core::RigidBody	parent,
		IMP::core::RigidBody	child,
		IMP::core::XYZ	a,
		IMP::core::XYZ	b,
		IMP::core::XYZ	c
	)

constructs a joint that controls the angle a-b-c. The joint revolves around the axis that passes through b, normal to the plane containing a, b and c. a,b and c are the witnesses for the bond angle.

Parameters

parent,child	kinematic nodes upstream and downstream (resp.) of this joint
a,b,c	'witnesses' whose coordinates define the joint angle a-b-c

Note: It is assumed that a and b are upstream of or inside this joint's child rigid body, and that c is downstream of it or inside it.

Member Function Documentation

virtual double IMP::kinematics::BondAngleRevoluteJoint::get_current_angle_from_cartesian_witnesses ( ) const

overrideprotectedvirtual

this protected method uses the Cartesian witnesses to compute the actual current bond angle of this joint (assuming external coordinates of required Cartesian witnesses are up to date)

Implements IMP::kinematics::RevoluteJoint.

virtual void IMP::kinematics::BondAngleRevoluteJoint::update_axis_of_rotation_from_cartesian_witnesses ( )

overrideprotectedvirtual

updates the rot_axis_unit_vector_ and rot_axis_origin_ variables using b_ as origin of rotation and a vector perpendicular to the plane containing a_,b_,c_ as axis of rotation, in global coordinates

Implements IMP::kinematics::RevoluteJoint.

Definition at line 278 of file revolute_joints.h.

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The documentation for this class was generated from the following file:

revolute_joints.h

Detailed Description

Public Member Functions

Protected Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation