Detailed Description

Fast alignment of points to a density map using principal components.

Fast alignment of a set of points to a density map using principal components of the map and the points.

This type of alignment is good for low-resolution maps.

Note, that principal components are not well-defined for globular objects, so the method may fail in the case of symmetric structures

Definition at line 28 of file PCAAligner.h.

Public Member Functions
	PCAAligner (IMP::em::DensityMap *map, float density_threshold)
	Constructor. More...

algebra::Transformation3Ds	align (const algebra::Vector3Ds &points) const
	Align the principal components of the points to those of the density map. More...

IMP::VersionInfo	get_version_info () const override
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

virtual std::string	get_type_name () const

Additional Inherited Members
Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::em::PCAAligner::PCAAligner	(	IMP::em::DensityMap *	map,
		float	density_threshold
	)

Constructor.

Parameters

map	input density map
density_threshold	a threshold that determines which map voxels to use in the fit

Definition at line 35 of file PCAAligner.h.

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algebra::Transformation3Ds IMP::em::PCAAligner::align ( const algebra::Vector3Ds & points ) const

Align the principal components of the points to those of the density map.

Parameters

points The points for PCA alignment to the map

IMP::VersionInfo IMP::em::PCAAligner::get_version_info ( ) const

overridevirtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 49 of file PCAAligner.h.

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The documentation for this class was generated from the following file: