IMP Reference Guide
2.21.0
The Integrative Modeling Platform
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Functions to traverse and score the spatiotemporal graphs. More...
Functions to traverse and score the spatiotemporal graphs.
Functions | |
def | find_all_paths |
Finds all paths between nodes, which already have edges drawn between them. More... | |
def | get_graph_as_dict |
converts a list of graphNode objects (nodes), which have been initiated with scores and edges into a dictionary representation of a graph (graph). More... | |
def | score_graph |
Function to score a graph based on nodes, which has scores and edges, as well as keys, which is a list of the states visited. More... | |
def IMP.spatiotemporal.score_graph.find_all_paths | ( | graph, | |
start, | |||
end, | |||
path = [] |
|||
) |
Finds all paths between nodes, which already have edges drawn between them.
graph | dictionary representation of the graph, acquired in get_graph_as_dict() |
start | graphNode, candidate for starting the graph |
end | graphNode, candidate to end the graph |
path | list of graphNodes on the path, which is defined recursively. |
Definition at line 26 of file score_graph.py.
def IMP.spatiotemporal.score_graph.get_graph_as_dict | ( | nodes | ) |
converts a list of graphNode objects (nodes), which have been initiated with scores and edges into a dictionary representation of a graph (graph).
Each node in the graph is a key, which returns edges in the next state.
nodes | list of graphNode objects |
Definition at line 13 of file score_graph.py.
def IMP.spatiotemporal.score_graph.score_graph | ( | nodes, | |
keys | |||
) |
Function to score a graph based on nodes, which has scores and edges, as well as keys, which is a list of the states visited.
Note that all edges must be drawn and scores must be added to nodes before calling this function.
nodes | list of graphNode objects, which has been initialized with all weights and edges |
keys | list of all ordered states (strings) visited along the graph. Paths will be determined in sequential order passed to this function. |
Definition at line 56 of file score_graph.py.