IMP Reference Guide
2.21.0
The Integrative Modeling Platform
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Determine small angle X-ray (SAXS) profiles. More...
Determine small angle X-ray (SAXS) profiles.
Determine small angle X-ray (SAXS) profiles. The IMP.saxs module contains functions that, given an atomic protein structure, can calculate its SAXS profile using the Debye formula, and then fit this profile against the experimentally determined one. FoXS is a simple command line interface to this functionality which takes as input a number of PDB files and/or SAXS profiles. There is also a web server available.
Examples:
Author(s): Dina Schneidman
Maintainer: duhovka
License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
Publications:
Standard module functions | |
All | |
std::string | get_module_version () |
Return the version of this module, as a string. More... | |
std::string | get_module_name () |
std::string | get_data_path (std::string file_name) |
Return the full path to one of this module's data files. More... | |
std::string | get_example_path (std::string file_name) |
Return the full path to one of this module's example files. More... | |
std::string IMP::foxs::get_data_path | ( | std::string | file_name | ) |
Return the full path to one of this module's data files.
To read the data file "data_library" that was placed in the data
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.
std::string IMP::foxs::get_example_path | ( | std::string | file_name | ) |
Return the full path to one of this module's example files.
To read the example file "example_protein.pdb" that was placed in the examples
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.
std::string IMP::foxs::get_module_version | ( | ) |
Return the version of this module, as a string.
Definition at line 5 of file EMageFit/__init__.py.