IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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Classes for writing output files and processing them. More...
Classes for writing output files and processing them.
Classes | |
class | Cluster |
A container for models organized into clusters. More... | |
class | DataEntry |
A class to store data associated to a model. More... | |
class | Output |
Class for easy writing of PDBs, RMFs, and stat files. More... | |
class | OutputStatistics |
Collect statistics from ProcessOutput.get_fields(). More... | |
class | ProcessOutput |
A class for reading stat files (either rmf or ascii v1 and v2) More... | |
class | ProtocolOutput |
Base class for capturing a modeling protocol. More... | |
class | RMFHierarchyHandler |
class to allow more advanced handling of RMF files. More... | |
class | StatHierarchyHandler |
class to link stat files to several rmf files More... | |
Functions | |
def | plot_field_histogram |
Plot a list of histograms from a value list. More... | |
def | plot_fields |
Plot the given fields and save a figure as output . More... | |
def | plot_fields_box_plots |
Plot time series as boxplots. More... | |
def IMP.pmi.output.plot_field_histogram | ( | name, | |
values_lists, | |||
valuename = None , |
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bins = 40 , |
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colors = None , |
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format = 'png' , |
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reference_xline = None , |
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yplotrange = None , |
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xplotrange = None , |
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normalized = True , |
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leg_names = None |
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) |
Plot a list of histograms from a value list.
name | the name of the plot |
values_lists | the list of list of values eg: [[...],[...],[...]] |
valuename | the y-label |
bins | the number of bins |
colors | If None, will use rainbow. Else will use specific list |
format | output format |
reference_xline | plot a reference line parallel to the y-axis |
yplotrange | the range for the y-axis |
normalized | whether the histogram is normalized or not |
leg_names | names for the legend |
def IMP.pmi.output.plot_fields | ( | fields, | |
output, | |||
framemin = None , |
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framemax = None |
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) |
Plot the given fields and save a figure as output
.
The fields generally are extracted from a stat file using ProcessOutput.get_fields().
def IMP.pmi.output.plot_fields_box_plots | ( | name, | |
values, | |||
positions, | |||
frequencies = None , |
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valuename = 'None' , |
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positionname = 'None' , |
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xlabels = None , |
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scale_plot_length = 1.0 |
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) |