IMP.pmi1.restraints.npc Namespace Reference

Specialized restraints for modeling the Nuclear Pore Complex. More...

Detailed Description

Specialized restraints for modeling the Nuclear Pore Complex.

These restraints have been used to model the Nuclear Pore Complex (NPC) but may be useful for other applications too. They model the NPC as lying in the xy plane, centered at the origin. (Transport through the pore corresponds to movement along the z axis.) The surface of the nuclear membrane is represented as the surface of a half torus, also lying in the xy plane and centered at the origin. Individual proteins (or parts of proteins, such as the N- or C- termini) are then localized to different regions of the complex (e.g. near the membrane or pore, or on the nuclear or cytoplasmic side) by simple restraints on their Cartesian coordinates.

Classes
class	MembraneExclusionRestraint
	Create Membrane Exclusion Restraint. More...
class	MembraneSurfaceLocationConditionalRestraint
	Create Membrane Surface Location CONDITIONAL Restraint for Nup120 ALPS Motifs - Mutually Exclusive from (135,152,'Nup120') and (197,216,'Nup120'). More...
class	MembraneSurfaceLocationRestraint
	Create Membrane Surface Location Restraint. More...
class	XYRadialPositionLowerRestraint
	Create XYRadial Position Lower restraints. More...
class	XYRadialPositionRestraint
	Create XYRadial Position Restraint. More...
class	XYRadialPositionUpperRestraint
	Create XYRadial Position Upper restraints. More...
class	YAxialPositionLowerRestraint
	Create Y-Axial Position Lower restraints. More...
class	YAxialPositionRestraint
	Create Y-Axial Position restraints. More...
class	YAxialPositionUpperRestraint
	Create Y-Axial Position Upper restraints. More...
class	ZAxialPositionLowerRestraint
	Create Z-Axial Position Lower restraints. More...
class	ZAxialPositionRestraint
	Create Z-Axial Position restraints. More...
class	ZAxialPositionUpperRestraint
	Create Z-Axial Position Upper restraints. More...