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IMP Reference Guide
2.20.2
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
include
IMP
em
version 2.20.2
em/embedding.h
Go to the documentation of this file.
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/**
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* \file IMP/em/embedding.h
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* \brief Cluster sets of points.
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*
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* Copyright 2007-2022 IMP Inventors. All rights reserved.
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*
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*/
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#ifndef IMPEM_EMBEDDING_H
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#define IMPEM_EMBEDDING_H
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#include <IMP/em/em_config.h>
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#include "
DensityMap.h
"
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#include <
IMP/statistics/Embedding.h
>
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IMPEM_BEGIN_NAMESPACE
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/** Generate a set of points from the voxels in a em::DensityMap
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which are above a certain threshold.
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*/
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class
IMPEMEXPORT
HighDensityEmbedding
:
public
statistics::Embedding
{
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algebra::Vector3Ds
points_;
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public
:
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HighDensityEmbedding
(
DensityMap
*dm,
double
threshold);
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algebra::VectorKD
get_point(
unsigned
int
i)
const override
;
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unsigned
int
get_number_of_items()
const override
;
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IMP_OBJECT_METHODS
(
HighDensityEmbedding
);
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};
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IMPEM_END_NAMESPACE
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#endif
/* IMPEM_EMBEDDING_H */
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::Vector< VectorD< 3 > >
DensityMap.h
Class for handling density maps.
IMP::em::DensityMap
Class for handling density maps.
Definition:
DensityMap.h:95
IMP::statistics::Embedding
Store data to be clustered for embedding based algorithms.
Definition:
statistics/embedding.h:25
IMP::em::HighDensityEmbedding
Definition:
em/embedding.h:21
Embedding.h
Cluster sets of points.
IMP::algebra::VectorKD
VectorD<-1 > VectorKD
Definition:
VectorD.h:441