IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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class for envelope based scoring using MapDistanceTransform More...
#include <IMP/em/EnvelopeScore.h>
class for envelope based scoring using MapDistanceTransform
Definition at line 21 of file EnvelopeScore.h.
Public Member Functions | |
EnvelopeScore (const MapDistanceTransform *mdt) | |
IMP::VersionInfo | get_version_info () const override |
Get information about the module and version of the object. More... | |
bool | is_penetrating (const IMP::algebra::Vector3Ds &points, float penetration_thr) const |
bool | is_penetrating (const IMP::algebra::Vector3Ds &points, const IMP::algebra::Transformation3D &trans, float penetration_thr) const |
double | score (const IMP::algebra::Vector3Ds &points) const |
double | score (const IMP::algebra::Vector3Ds &points, const IMP::algebra::Transformation3D &trans) const |
Public Member Functions inherited from IMP::Object | |
virtual void | clear_caches () |
CheckLevel | get_check_level () const |
LogLevel | get_log_level () const |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
virtual std::string | get_type_name () const |
Additional Inherited Members | |
Protected Member Functions inherited from IMP::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
virtual void | do_destroy () |
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overridevirtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 63 of file EnvelopeScore.h.
bool IMP::em::EnvelopeScore::is_penetrating | ( | const IMP::algebra::Vector3Ds & | points, |
float | penetration_thr | ||
) | const |
check for penetration with respect to the envelope as defined by the distance transform
[in] | points | check this set of points for penetration |
[in] | penetration_thr | threshold that defines penetration. Use penetration_thr=0 to require for all points inside the envelope to allow some penetration set the threshold to the -distance of the allowed penetration distance. Recommended value is map resolution. |
bool IMP::em::EnvelopeScore::is_penetrating | ( | const IMP::algebra::Vector3Ds & | points, |
const IMP::algebra::Transformation3D & | trans, | ||
float | penetration_thr | ||
) | const |
same as above
[in] | points | |
[in] | trans | apply this transformation on points before checking for penetrations |
[in] | penetration_thr |
double IMP::em::EnvelopeScore::score | ( | const IMP::algebra::Vector3Ds & | points | ) | const |
score points with respect to the distance transform the score awards points that fall into the envelope and penalizes for points outside the envelope
double IMP::em::EnvelopeScore::score | ( | const IMP::algebra::Vector3Ds & | points, |
const IMP::algebra::Transformation3D & | trans | ||
) | const |
same as above
[in] | points | |
[in] | trans | apply this transformation on points before scoring |