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IMP Reference Guide
2.20.2
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
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include
IMP
atom
version 2.20.2
RemoveTranslationOptimizerState.h
Go to the documentation of this file.
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/**
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* \file IMP/atom/RemoveTranslationOptimizerState.h
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* \brief Remove rigid translation during optimization.
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*
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* Copyright 2007-2022 IMP Inventors. All rights reserved.
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*
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*/
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#ifndef IMPATOM_REMOVE_TRANSLATION_OPTIMIZER_STATE_H
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#define IMPATOM_REMOVE_TRANSLATION_OPTIMIZER_STATE_H
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#include <IMP/atom/atom_config.h>
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#include <
IMP/Particle.h
>
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#include <
IMP/base_types.h
>
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#include <
IMP/OptimizerState.h
>
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IMPATOM_BEGIN_NAMESPACE
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//! Removes rigid translation from the particles.
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/** Recenters the bunch of particles by putting the very first particle
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at the origin and rigidly translating all the others.
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*/
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class
IMPATOMEXPORT
RemoveTranslationOptimizerState
:
public
OptimizerState
{
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public
:
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RemoveTranslationOptimizerState
(
Model
*m,
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ParticleIndexesAdaptor
pis);
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//! Set the particles to use.
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void
set_particles
(
const
Particles
&pis) { pis_ = pis; }
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//! Remove translation now
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void
remove_translation()
const
;
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IMP_OBJECT_METHODS
(
RemoveTranslationOptimizerState
);
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protected
:
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virtual
void
do_update
(
unsigned
int
call)
override
;
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private
:
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Particles
pis_;
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};
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IMP_OBJECTS
(
RemoveTranslationOptimizerState
,
RemoveTranslationOptimizerStates
);
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IMPATOM_END_NAMESPACE
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#endif
/* IMPATOM_REMOVE_TRANSLATION_OPTIMIZER_STATE_H */
base_types.h
Basic types used by IMP.
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::OptimizerState::do_update
virtual void do_update(unsigned int)
Definition:
OptimizerState.h:133
IMP::Vector< Pointer< Particle > >
IMP::ParticleIndexesAdaptor
Take Decorator, Particle or ParticleIndex.
Definition:
particle_index.h:50
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
Model.h:86
IMP::atom::RemoveTranslationOptimizerState::set_particles
void set_particles(const Particles &pis)
Set the particles to use.
Definition:
RemoveTranslationOptimizerState.h:29
Particle.h
Classes to handle individual model particles. (Note that implementation of inline functions is in int...
IMP_OBJECTS
#define IMP_OBJECTS(Name, PluralName)
Define the types for storing lists of object pointers.
Definition:
object_macros.h:44
IMP::atom::RemoveTranslationOptimizerState
Removes rigid translation from the particles.
Definition:
RemoveTranslationOptimizerState.h:23
IMP::OptimizerState
Shared optimizer state that is invoked upon commitment of new coordinates.
Definition:
OptimizerState.h:45
OptimizerState.h
Shared optimizer state.