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IMP Reference Guide
2.20.2
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
include
IMP
isd
version 2.20.2
GammaPrior.h
Go to the documentation of this file.
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/**
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* \file IMP/isd/GammaPrior.h
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* \brief A restraint on a scale parameter.
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*
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* Copyright 2007-2022 IMP Inventors. All rights reserved.
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*
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*/
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#ifndef IMPISD_GAMMA_PRIOR_H
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#define IMPISD_GAMMA_PRIOR_H
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#include <IMP/isd/isd_config.h>
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#include <
IMP/SingletonScore.h
>
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#include <
IMP/Restraint.h
>
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IMPISD_BEGIN_NAMESPACE
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//! Uniform distribution with harmonic boundaries
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class
IMPISDEXPORT
GammaPrior
:
public
Restraint
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{
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Pointer<Particle>
p_;
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Float
theta_;
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Float
k_;
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public
:
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//! Create the restraint.
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GammaPrior
(
IMP::Model
* m,
Particle
*p,
Float
k,
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Float
theta, std::string name=
"GammaPrior%1%"
);
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virtual
double
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unprotected_evaluate
(
IMP::DerivativeAccumulator
*accum)
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const override
;
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virtual
double
evaluate_at(
Float
val)
const
;
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virtual
IMP::ModelObjectsTemp
do_get_inputs
()
const override
;
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IMP_OBJECT_METHODS
(
GammaPrior
);
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/* call for probability */
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virtual
double
get_probability()
const
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{
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return
exp(-
unprotected_evaluate
(
nullptr
));
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}
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};
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IMPISD_END_NAMESPACE
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#endif
/* IMPISD_GAMMA_PRIOR_H */
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::Restraint::unprotected_evaluate
virtual double unprotected_evaluate(DerivativeAccumulator *da) const
Return the unweighted score for the restraint.
IMP::Vector
A more IMP-like version of the std::vector.
Definition:
Vector.h:42
IMP::isd::GammaPrior
Uniform distribution with harmonic boundaries.
Definition:
GammaPrior.h:20
IMP::Pointer
A smart pointer to a reference counted object.
Definition:
Pointer.h:87
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
Model.h:86
SingletonScore.h
Define SingletonScore.
IMP::Float
double Float
Basic floating-point value (could be float, double...)
Definition:
types.h:19
IMP::Particle
Class to handle individual particles of a Model object.
Definition:
Particle.h:43
Restraint.h
Abstract base class for all restraints.
IMP::ModelObject::do_get_inputs
virtual ModelObjectsTemp do_get_inputs() const =0
IMP::DerivativeAccumulator
Class for adding derivatives from restraints to the model.
Definition:
DerivativeAccumulator.h:24
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition:
Restraint.h:56