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IMP Reference Guide
2.20.2
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
include
IMP
atom
version 2.20.2
CoverBond.h
Go to the documentation of this file.
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/**
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* \file IMP/atom/CoverBond.h
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* \brief Cover a bond with a sphere
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*
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* Copyright 2007-2022 IMP Inventors. All rights reserved.
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*/
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#ifndef IMPATOM_COVER_BOND_H
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#define IMPATOM_COVER_BOND_H
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#include <IMP/atom/atom_config.h>
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#include <
IMP/PairContainer.h
>
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#include <
IMP/SingletonContainer.h
>
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#include <
IMP/SingletonModifier.h
>
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#include <
IMP/singleton_macros.h
>
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IMPATOM_BEGIN_NAMESPACE
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//! Cover a bond with a sphere
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/** This is a version of core::CoverRefined optimized for bonds. It is
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about 4x faster than the general purpose one.
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*/
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class
IMPATOMEXPORT
CoverBond
:
public
SingletonModifier
{
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public
:
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CoverBond
();
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virtual
void
apply_index
(
Model
*m,
ParticleIndex
p)
const
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override
;
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virtual
ModelObjectsTemp
do_get_inputs
(
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Model
*m,
const
ParticleIndexes
&pis)
const override
;
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virtual
ModelObjectsTemp
do_get_outputs
(
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Model
*m,
const
ParticleIndexes
&pis)
const override
;
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IMP_SINGLETON_MODIFIER_METHODS
(
CoverBond
);
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IMP_OBJECT_METHODS
(
CoverBond
);
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;
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};
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IMP_OBJECTS
(
CoverBond
,
CoverBonds
);
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IMPATOM_END_NAMESPACE
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#endif
/* IMPATOM_COVER_BOND_H */
IMP::SingletonModifier
A base class for modifiers of ParticlesTemp.
Definition:
SingletonModifier.h:32
SingletonModifier.h
A Modifier on ParticlesTemp.
SingletonContainer.h
A container for Singletons.
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::Index< ParticleIndexTag >
singleton_macros.h
Macros for various classes.
IMP::ParticleOutputs::do_get_outputs
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
IMP::Vector
A more IMP-like version of the std::vector.
Definition:
Vector.h:42
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
Model.h:86
PairContainer.h
A container for Pairs.
IMP_SINGLETON_MODIFIER_METHODS
#define IMP_SINGLETON_MODIFIER_METHODS(Name)
Definition:
singleton_macros.h:124
IMP::ParticleInputs::do_get_inputs
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
IMP_OBJECTS
#define IMP_OBJECTS(Name, PluralName)
Define the types for storing lists of object pointers.
Definition:
object_macros.h:44
IMP::SingletonModifier::apply_index
virtual void apply_index(Model *m, ParticleIndex v) const =0
IMP::atom::CoverBond
Cover a bond with a sphere.
Definition:
CoverBond.h:24