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IMP Reference Guide
2.20.1
The Integrative Modeling Platform
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Find all nearby pairs by sweeping the bounding boxes. More...
#include <IMP/core/BoxSweepClosePairsFinder.h>
Inheritance diagram for IMP::core::BoxSweepClosePairsFinder:Find all nearby pairs by sweeping the bounding boxes.
This method is much faster than the quadratic one when there are are large sets of points.
The class BoxSweepClosePairsFinder requires CGAL in order to function.
Definition at line 24 of file BoxSweepClosePairsFinder.h.
Public Member Functions | |
| virtual ModelObjectsTemp | do_get_inputs (Model *m, const ParticleIndexes &pis) const override |
| Overload this method to specify the inputs. More... | |
| virtual IntPairs | get_close_pairs (const algebra::BoundingBox3Ds &bbs) const override |
| virtual IntPairs | get_close_pairs (const algebra::BoundingBox3Ds &bas, const algebra::BoundingBox3Ds &bbs) const override |
| virtual ParticleIndexPairs | get_close_pairs (Model *m, const ParticleIndexes &pc) const override |
| return all close pairs among pc in model m More... | |
| virtual ParticleIndexPairs | get_close_pairs (Model *m, const ParticleIndexes &pca, const ParticleIndexes &pcb) const override |
| return all close pairs among pc in model m More... | |
| virtual std::string | get_type_name () const override |
| virtual ::IMP::VersionInfo | get_version_info () const override |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::core::ClosePairsFinder | |
| ClosePairsFinder (std::string name) | |
| void | remove_pair_filter (PairPredicate *d) |
| void | remove_pair_filters (const PairPredicates &d) |
| void | set_pair_filters (const PairPredicates &ps) |
| void | set_pair_filters_order (const PairPredicates &objs) |
| unsigned int | add_pair_filter (PairPredicate *obj) |
| void | add_pair_filters (const PairPredicates &objs) |
| void | clear_pair_filters () |
| unsigned int | get_number_of_pair_filters () const |
| bool | get_has_pair_filters () |
| PairPredicate * | get_pair_filter (unsigned int i) const |
| PairPredicates | get_pair_filters () const |
| void | erase_pair_filter (unsigned int i) |
| void | reserve_pair_filters (unsigned int sz) |
| virtual void | set_distance (double d) |
| double | get_distance () const |
| Public Member Functions inherited from IMP::ParticleInputs | |
| ModelObjectsTemp | get_inputs (Model *m, const ParticleIndexes &pis) const |
| Get the ModelObjects read when the given list of particles is used. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Public Attributes inherited from IMP::core::ClosePairsFinder | |
| list | pair_filters |
| A Python list of PairFilters More... | |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
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overridevirtual |
Overload this method to specify the inputs.
Implements IMP::ParticleInputs.
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overridevirtual |
return all close pairs among pc in model m
Implements IMP::core::ClosePairsFinder.
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overridevirtual |
return all close pairs among pc in model m
Implements IMP::core::ClosePairsFinder.
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overridevirtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 40 of file BoxSweepClosePairsFinder.h.